PKS34_DICDI
ID PKS34_DICDI Reviewed; 3078 AA.
AC Q54FN2;
DT 05-MAY-2009, integrated into UniProtKB/Swiss-Prot.
DT 24-MAY-2005, sequence version 1.
DT 03-AUG-2022, entry version 109.
DE RecName: Full=Probable polyketide synthase 34;
DE Short=dipks34;
DE EC=2.3.1.-;
GN Name=pks34; ORFNames=DDB_G0290737;
OS Dictyostelium discoideum (Slime mold).
OC Eukaryota; Amoebozoa; Evosea; Eumycetozoa; Dictyostelia; Dictyosteliales;
OC Dictyosteliaceae; Dictyostelium.
OX NCBI_TaxID=44689;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=AX4;
RX PubMed=15875012; DOI=10.1038/nature03481;
RA Eichinger L., Pachebat J.A., Gloeckner G., Rajandream M.A., Sucgang R.,
RA Berriman M., Song J., Olsen R., Szafranski K., Xu Q., Tunggal B.,
RA Kummerfeld S., Madera M., Konfortov B.A., Rivero F., Bankier A.T.,
RA Lehmann R., Hamlin N., Davies R., Gaudet P., Fey P., Pilcher K., Chen G.,
RA Saunders D., Sodergren E.J., Davis P., Kerhornou A., Nie X., Hall N.,
RA Anjard C., Hemphill L., Bason N., Farbrother P., Desany B., Just E.,
RA Morio T., Rost R., Churcher C.M., Cooper J., Haydock S., van Driessche N.,
RA Cronin A., Goodhead I., Muzny D.M., Mourier T., Pain A., Lu M., Harper D.,
RA Lindsay R., Hauser H., James K.D., Quiles M., Madan Babu M., Saito T.,
RA Buchrieser C., Wardroper A., Felder M., Thangavelu M., Johnson D.,
RA Knights A., Loulseged H., Mungall K.L., Oliver K., Price C., Quail M.A.,
RA Urushihara H., Hernandez J., Rabbinowitsch E., Steffen D., Sanders M.,
RA Ma J., Kohara Y., Sharp S., Simmonds M.N., Spiegler S., Tivey A.,
RA Sugano S., White B., Walker D., Woodward J.R., Winckler T., Tanaka Y.,
RA Shaulsky G., Schleicher M., Weinstock G.M., Rosenthal A., Cox E.C.,
RA Chisholm R.L., Gibbs R.A., Loomis W.F., Platzer M., Kay R.R.,
RA Williams J.G., Dear P.H., Noegel A.A., Barrell B.G., Kuspa A.;
RT "The genome of the social amoeba Dictyostelium discoideum.";
RL Nature 435:43-57(2005).
RN [2]
RP IDENTIFICATION.
RX PubMed=17660200; DOI=10.1093/bioinformatics/btm381;
RA Zucko J., Skunca N., Curk T., Zupan B., Long P.F., Cullum J., Kessin R.H.,
RA Hranueli D.;
RT "Polyketide synthase genes and the natural products potential of
RT Dictyostelium discoideum.";
RL Bioinformatics 23:2543-2549(2007).
CC -!- FUNCTION: Probable polyketide synthase. {ECO:0000250}.
CC -!- COFACTOR:
CC Name=pantetheine 4'-phosphate; Xref=ChEBI:CHEBI:47942;
CC Evidence={ECO:0000250};
CC Note=Binds 1 phosphopantetheine covalently. {ECO:0000250};
CC -!- DOMAIN: Modular protein that is responsible for the completion of one
CC condensation-processing cycle. The beta-ketoacyl synthase region is
CC responsible for the actual condensation reaction while the acyl/malonyl
CC transferase region is responsible for incorporating carboxylic acids
CC units onto an acyl carrier protein (ACP) domain (By similarity).
CC {ECO:0000250}.
CC -!- MISCELLANEOUS: Encoded by one of the numerous copies of polyketide
CC synthase genes and clustered as a pair pks33/pks34 in chromosome 5.
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DR EMBL; AAFI02000169; EAL62074.1; -; Genomic_DNA.
DR RefSeq; XP_635580.1; XM_630488.1.
DR SMR; Q54FN2; -.
DR STRING; 44689.DDB0235303; -.
DR PaxDb; Q54FN2; -.
DR PRIDE; Q54FN2; -.
DR EnsemblProtists; EAL62074; EAL62074; DDB_G0290737.
DR GeneID; 8627801; -.
DR KEGG; ddi:DDB_G0290737; -.
DR dictyBase; DDB_G0290737; pks34.
DR eggNOG; KOG1178; Eukaryota.
DR eggNOG; KOG1202; Eukaryota.
DR HOGENOM; CLU_000022_31_0_1; -.
DR InParanoid; Q54FN2; -.
DR OMA; HAYESQH; -.
DR PhylomeDB; Q54FN2; -.
DR PRO; PR:Q54FN2; -.
DR Proteomes; UP000002195; Chromosome 5.
DR GO; GO:0004315; F:3-oxoacyl-[acyl-carrier-protein] synthase activity; IEA:InterPro.
DR GO; GO:0016491; F:oxidoreductase activity; IEA:InterPro.
DR GO; GO:0006633; P:fatty acid biosynthetic process; IEA:InterPro.
DR CDD; cd05235; SDR_e1; 1.
DR Gene3D; 1.10.1200.10; -; 1.
DR Gene3D; 3.10.129.110; -; 1.
DR Gene3D; 3.40.366.10; -; 1.
DR Gene3D; 3.40.47.10; -; 1.
DR Gene3D; 3.40.50.150; -; 1.
DR InterPro; IPR001227; Ac_transferase_dom_sf.
DR InterPro; IPR036736; ACP-like_sf.
DR InterPro; IPR014043; Acyl_transferase.
DR InterPro; IPR016035; Acyl_Trfase/lysoPLipase.
DR InterPro; IPR013154; ADH_N.
DR InterPro; IPR013120; Far_NAD-bd.
DR InterPro; IPR011032; GroES-like_sf.
DR InterPro; IPR018201; Ketoacyl_synth_AS.
DR InterPro; IPR014031; Ketoacyl_synth_C.
DR InterPro; IPR014030; Ketoacyl_synth_N.
DR InterPro; IPR016036; Malonyl_transacylase_ACP-bd.
DR InterPro; IPR013217; Methyltransf_12.
DR InterPro; IPR036291; NAD(P)-bd_dom_sf.
DR InterPro; IPR032821; PKS_assoc.
DR InterPro; IPR020841; PKS_Beta-ketoAc_synthase_dom.
DR InterPro; IPR020807; PKS_dehydratase.
DR InterPro; IPR042104; PKS_dehydratase_sf.
DR InterPro; IPR020843; PKS_ER.
DR InterPro; IPR013968; PKS_KR.
DR InterPro; IPR009081; PP-bd_ACP.
DR InterPro; IPR029063; SAM-dependent_MTases_sf.
DR InterPro; IPR010080; Thioester_reductase-like_dom.
DR InterPro; IPR016039; Thiolase-like.
DR Pfam; PF00698; Acyl_transf_1; 1.
DR Pfam; PF08240; ADH_N; 1.
DR Pfam; PF16197; KAsynt_C_assoc; 1.
DR Pfam; PF00109; ketoacyl-synt; 1.
DR Pfam; PF02801; Ketoacyl-synt_C; 1.
DR Pfam; PF08659; KR; 1.
DR Pfam; PF08242; Methyltransf_12; 1.
DR Pfam; PF07993; NAD_binding_4; 1.
DR Pfam; PF14765; PS-DH; 1.
DR SMART; SM00827; PKS_AT; 1.
DR SMART; SM00829; PKS_ER; 1.
DR SMART; SM00825; PKS_KS; 1.
DR SUPFAM; SSF47336; SSF47336; 1.
DR SUPFAM; SSF50129; SSF50129; 1.
DR SUPFAM; SSF51735; SSF51735; 3.
DR SUPFAM; SSF52151; SSF52151; 1.
DR SUPFAM; SSF53335; SSF53335; 1.
DR SUPFAM; SSF53901; SSF53901; 1.
DR SUPFAM; SSF55048; SSF55048; 1.
DR PROSITE; PS00606; B_KETOACYL_SYNTHASE; 1.
DR PROSITE; PS50075; CARRIER; 1.
PE 3: Inferred from homology;
KW Coiled coil; Phosphopantetheine; Phosphoprotein; Reference proteome;
KW Transferase.
FT CHAIN 1..3078
FT /note="Probable polyketide synthase 34"
FT /id="PRO_0000371394"
FT DOMAIN 2541..2618
FT /note="Carrier"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00258"
FT REGION 181..234
FT /note="Beta-ketoacyl synthase"
FT REGION 665..698
FT /note="Acyl/malonyl transferase"
FT REGION 1375..1396
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 2617..2640
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 2739..2761
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 2621..2652
FT /evidence="ECO:0000255"
FT ACT_SITE 200
FT /note="For beta-ketoacyl synthase activity"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU10022"
FT ACT_SITE 675
FT /note="For acyl/malonyl transferase activity"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU10022"
FT MOD_RES 2578
FT /note="O-(pantetheine 4'-phosphoryl)serine"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00258"
SQ SEQUENCE 3078 AA; 350410 MW; 3173FB11C0DE972D CRC64;
MTENIHNNST YNNKLIRDRN DYDDVDGSGD VAVIGIGLRF PSGNLKESIS KPNQLFNELL
NGLDGIVTTS ERWSDNYYLN GEIVSKFAGL LPLDEWKQFD PIFFAINPSN DNVSSIDPQQ
RLLLKCVWEA LEDSGIDPIS LRGTNTSTFI GSSTIDYNDL QRSPLETQNN IFGSTTHSIA
NRIGYCFDFR GENLTIDTAC SSSSNAINCG YNSIKSNKSN VSIVGGVNFI LDPHISKSFT
KLDMLSPTGR CHTFSSDADG YVRSEGVGIV VLKKLKDAIK DSNNIYCVIK GSNSNIDGNF
DKLNFYSPSK SSQYENIKLA IKSTNGQINE SDIDYCETHG TGTPTGDPIE LEGISRVFNN
KASTTTLINN NKQVLVGSIK SNIGHTEACS GVASLIKCCL MFKNKLFLQN INFKEPNPLI
NFKEWGLKVV TEPIKFNENK STVMLLNNFG VTGSNVCLIL SEFYGNQFSY NKSNSYHKIK
IDNKFNEKKK YLIPLSSNSS TSLNNYKSSI IKHSNSSSTT TSFKEFVHNQ IKFKSTSLIQ
KSVIIASDWN EFQDENNQIK LENSDNLISN ITVEKKKSPI TVMVLCGQGS QYNKMASSLY
DNEPIFRESV NRFDKELFKY YGYSVLDKLR SIDDKDLISI HQPILAQPAN VIIQVSLYEL
YKHWGVSADI IIGHSLGEIS SSYCSGIIDF QTLCYLTYHR SVAQNRTIGT GRMLSVNISS
DEFINKYQST TKYESLEIAC YNSPTSIVIS GNEDLLNEIT NEFKSNDIFC TMLGLLSSFH
TSSQQMIKDE VCSLNISSKQ PSIAVFSTVT TNLFNHQSSP FNADYVFNNI RQPVRFTQTI
TNLYKHIESN DMGNEITFIE VSPHPTLQYY LNQMKSTQSS YFNNGKNITI YSPLNKKKND
YNEFLKTISL LYVNNNFDIN FKSQLINNNN TNQLNNLPLY QWDDKEYFKI NSFHEKIKNE
GPSIHSLGNN TDSPYPSYQT FIDIKKLPFQ WLKGHQVSDK FYYPGMGYVL NLLSIYPNQD
ITIGSLEFKS PLVLTEGNNQ CLQTTIAPLS KNEFNIKSHY KDQKTNQWIL SSLGNFSLTK
HNIENNEPIN IQSLKDKCNF TSISKQDLYE TIRIKTNLTY KGLFQGVKQC HIGSNCSLTI
VSLNEIYNQK EYNHLLNNSI MDTFFNTAIL DTCLHGVLVA VTQPIVLDRI EAFKFYSSNY
PSFNNNNNSN NNDTIKELYV YSEIRARTNS QTYSGSIKII LPNGTLLVDI GNVVCTIVGS
NPDSTIICKP PSNEIYTPYL QSKDSMINKP EQFKHLYRVD EFSVKEEGNR FISKGLLPSL
FYKHINKRCP SINLESLTTL EYDQFKQLYY DNSLANENLF KFIFEVLKKF QNNPNINNNN
NNNNNNNNNN NNNSNGYNNY ENLYIRATKV MAKQLFPLKD DDSITDTPQS LFESGYLDEF
YKNSNVIKPS NNLLSEIIVE TLKPILNEPI VFRILEAGGG TGSLSLLILE KICKLLNDNS
TTSIINIEFT WSDVSASFFA EIKENFSSFT NHNNLNIIYR VLDLEKPLLD QDLKASYYDF
VVMSNVMHVV KKLKPTLNEI HNILTPNGQL LFIEPPYKSF YFDSIFGCFS QWWPSSDSDI
ELRPDRCCMK QEKWINLLNQ CNYRDTIMSG NDNLVFLIQT RKPTINEIIS EQSISLDQLN
SFNNIILFSS NSNNIRNINS YKNDICSSSI QNLIRLNQEL KHKIVNISNY NEFQSWITNY
QNKDDCNKTL IIFLKSIEST MNTFNFKEIT FEYIQINQLI LKLELSNNFK HLLLSLNSTT
DNYLSSSIIG AARYFVEFPQ LDLLTLNYDN ISIENNQQLS LINYLINPNN NIQKEFTINN
NKVYYERYCR RSNNIKSIFQ SKSFETNKDN LYIQLNSNLE YQLYSKKAKL NSNEVEIEVK
ATGINYKDYL MYIGMIGSDL DIKYGKEYEI ENGIGIDNPN IGNDFSGIIT RLGNNVKKFK
VGDQVCGIGS KASSSHVIVD FTSIYYKPLN YSHSVSASIP SIYITSLHSI YSIGNLKSNE
SILIHSAAGG IGISSLDLLK SKQHQGYIFL TVSSKDKEEY LIKKYGSLIT AIYSSRNKNY
VKDIKNKLME LGEVEQQGVD LILNTLSSEY MDSNFQCLNL SGRIVDLSIT HLTPNDYMTN
NHFKFNMTYS NVEVVDFTSK LIKSYLKKII KMINSNKLEL SVPIIEYSNN QFKDAIEYIN
QRKHIGKIIV NHNQDEFNRV YNNYQSNNNH IIMKHLYDIS KLNIGKNILL TGQTGIVLEI
LKYLVKYSNH SIENIIILSK SKLKWELELL INQSKFKKDN NIKFHFNQID IEDSNKVNQV
LNQLELNENI TNIDSIIHFA FMNDIGDVQQ VDMNRLNNTH GAKTIGAINL HNQSINRSWN
IKQFIMASSV VSIFGSDQQC CYVSACSVID SLSKYRHSIG LPSLAINLGA ISSTGFVSRN
NAIETMFKSS IFNLFSPQLV ISSLDLFIQN QHQYPNYCLS DFNFEVLPST LTNQYHSKFD
FEINIVKKSN QMKSFTGGNG DNNEIIRSTI LNKISELLSI DESKINEDLQ LTQYGMDSLV
IVQLKNFIDN QLGHNIITIQ QLQNNKINQS IEIIKSAHNN NNNNNNNNNN NNNNNNNNNN
LVKKEQQSLD EFIKNETKLN ESIISRPYSI KNILNNNNNS KSIFLTGSTG FLGAYLLTEL
IKMNNISKIY CLIRNNSKLT NPIDVIINNL KKHQLINMNK GSPNQRLNSN IESGDNSDNN
SQISEDQLIK IIPTIGDISK DNFGLTEQDY LKLSNECDII INSAADLDLK SNYEESKTVN
VNNVNQVIKL SVSNNSSQKL IVHFSSLAVF INHPFKDEED FEETNLVPSY NSTPIGYVQS
KVISEKLLTN AAESRGIPSI IIRPPDIFSN PITGIGHSND FISLLIKSSK EIGYYPNIHK
SVFTTPVTTI AKTTIDLIFN ENSWNQNKSK PISIYNFNGD SIEMKSFYRV LENSFKCKEI
DFYEWIELVS KSNGKSSKRY STFHIHKNQN LLLTSFKINS LFKMSNSTKE LLISIGSYNH
QDWEINESMI FNDIINNH