PLA5_ORYSJ
ID PLA5_ORYSJ Reviewed; 465 AA.
AC Q5NAI4; A0A0N7KDL8; B9EZ36;
DT 31-MAY-2011, integrated into UniProtKB/Swiss-Prot.
DT 01-FEB-2005, sequence version 1.
DT 03-AUG-2022, entry version 96.
DE RecName: Full=Phospholipase A1-II 5;
DE EC=3.1.1.-;
GN OrderedLocusNames=Os01g0710700, LOC_Os01g51360;
GN ORFNames=OsJ_03214, P0456F08.24;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12447438; DOI=10.1038/nature01184;
RA Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y.,
RA Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H.,
RA Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M.,
RA Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M.,
RA Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T.,
RA Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S.,
RA Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H.,
RA Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y.,
RA Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S.,
RA Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y.,
RA Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S.,
RA Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H.,
RA Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.;
RT "The genome sequence and structure of rice chromosome 1.";
RL Nature 420:312-316(2002).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
CC -!- FUNCTION: Acylhydrolase that catalyzes the hydrolysis of phospholipids
CC at the sn-1 position. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250}.
CC -!- SIMILARITY: Belongs to the AB hydrolase superfamily. Lipase family.
CC {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=EEE55280.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AP002901; BAD81525.1; -; Genomic_DNA.
DR EMBL; AP008207; BAF05955.1; -; Genomic_DNA.
DR EMBL; AP014957; BAS73977.1; -; Genomic_DNA.
DR EMBL; CM000138; EEE55280.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AK069577; BAG91498.1; -; mRNA.
DR EMBL; AK104373; BAG96630.1; -; mRNA.
DR EMBL; AK106129; BAG97590.1; -; mRNA.
DR RefSeq; XP_015622065.1; XM_015766579.1.
DR AlphaFoldDB; Q5NAI4; -.
DR SMR; Q5NAI4; -.
DR STRING; 4530.OS01T0710700-01; -.
DR ESTHER; orysa-Q5NAI4; Plant_phospholipase.
DR PaxDb; Q5NAI4; -.
DR PRIDE; Q5NAI4; -.
DR EnsemblPlants; Os01t0710700-01; Os01t0710700-01; Os01g0710700.
DR GeneID; 4327831; -.
DR Gramene; Os01t0710700-01; Os01t0710700-01; Os01g0710700.
DR KEGG; osa:4327831; -.
DR eggNOG; KOG4569; Eukaryota.
DR HOGENOM; CLU_018841_0_0_1; -.
DR InParanoid; Q5NAI4; -.
DR OMA; DSHSKYC; -.
DR OrthoDB; 612344at2759; -.
DR Proteomes; UP000000763; Chromosome 1.
DR Proteomes; UP000007752; Chromosome 1.
DR Proteomes; UP000059680; Chromosome 1.
DR Genevisible; Q5NAI4; OS.
DR GO; GO:0005737; C:cytoplasm; ISS:UniProtKB.
DR GO; GO:0008970; F:phospholipase A1 activity; ISS:UniProtKB.
DR GO; GO:0071493; P:cellular response to UV-B; IEA:EnsemblPlants.
DR GO; GO:0016042; P:lipid catabolic process; IEA:UniProtKB-KW.
DR GO; GO:0009650; P:UV protection; IEA:EnsemblPlants.
DR Gene3D; 3.40.50.1820; -; 1.
DR InterPro; IPR029058; AB_hydrolase.
DR InterPro; IPR002921; Fungal_lipase-like.
DR InterPro; IPR033556; PLA.
DR PANTHER; PTHR31828; PTHR31828; 1.
DR Pfam; PF01764; Lipase_3; 1.
DR SUPFAM; SSF53474; SSF53474; 1.
PE 2: Evidence at transcript level;
KW Cytoplasm; Hydrolase; Lipid degradation; Lipid metabolism;
KW Reference proteome.
FT CHAIN 1..465
FT /note="Phospholipase A1-II 5"
FT /id="PRO_0000409369"
FT ACT_SITE 233
FT /note="Acyl-ester intermediate"
FT /evidence="ECO:0000250"
FT ACT_SITE 233
FT /note="Charge relay system"
FT /evidence="ECO:0000250"
FT ACT_SITE 297
FT /note="Charge relay system"
FT /evidence="ECO:0000250"
FT ACT_SITE 336
FT /note="Charge relay system"
FT /evidence="ECO:0000250"
SQ SEQUENCE 465 AA; 50453 MW; 5167A02D019FF0EE CRC64;
MDKSQGVLLS SNVGAGSRPW PELLGSAHWD GLLDPLDLTL RRLILLCGDL CQVTYDSFNS
DSHSKYCGTC RFSRSTLLDR TQFPAAGDLS VAAYLYATSD ATAFPGSMVY SMSREAWSKE
SNWIGYVAVS NDAAAAASGQ RVIYVAWRGT IRSLEWVDVL KPDLVDHDDI LPEGHPGRGR
SRVMKGWYLI YSSTDERSPF SKYSARDQML AAVRELVARY RNESLGVVCT GHSLGASLAT
LCAFDIVVNG VSKVGDGAHI PVTAVVFGSP QIGNPEFKKQ FEEQPNLRAL HVRNMPDLIP
LYPSGLLGYA NVGKTLQVDS KKSPYVKRDT SPGDYHNLQG ILHTVAGWNG KDGEFKLQVK
RSVALVNKSS GFLKDSNLVP ESWWVERNKG MVLGQNGEWQ LEGPAEENLP VPPVVTGKII
DDDVAAVATS SSAKEDKKTG KGSKLLSGLI DQLLCVPDTC KAGAA
