PLAS_ORYSJ
ID PLAS_ORYSJ Reviewed; 154 AA.
AC Q0DFC9; A3B7H9; B7EHW1; O24185; P20423; Q5VRI8; Q9SBB8;
DT 10-JUL-2007, integrated into UniProtKB/Swiss-Prot.
DT 17-OCT-2006, sequence version 1.
DT 03-AUG-2022, entry version 94.
DE RecName: Full=Plastocyanin, chloroplastic;
DE Flags: Precursor;
GN Name=PETE; OrderedLocusNames=Os06g0101600, LOC_Os06g01210;
GN ORFNames=OsJ_019001, OSJNBa0075G19.6;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA].
RC STRAIN=cv. Ilpoom; TISSUE=Leaf;
RA Lee J.-S.;
RT "Molecular cloning and characterization of plastocyanin precursor in
RT rice.";
RL Submitted (SEP-1998) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [7]
RP PROTEIN SEQUENCE OF 58-154, AND SUBCELLULAR LOCATION.
RX PubMed=2780537;
RA Yano H., Kamo M., Tsugita A., Aso K., Nozu Y.;
RT "The amino acid sequence of plastocyanin from rice (Oryza sativa,
RT subspecies japonica).";
RL Protein Seq. Data Anal. 2:385-389(1989).
CC -!- FUNCTION: Participates in electron transfer between P700 and the
CC cytochrome b6-f complex in photosystem I.
CC {ECO:0000250|UniProtKB:P18068}.
CC -!- COFACTOR:
CC Name=Cu(2+); Xref=ChEBI:CHEBI:29036;
CC Evidence={ECO:0000250|UniProtKB:P18068};
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast thylakoid membrane
CC {ECO:0000269|Ref.1}; Peripheral membrane protein
CC {ECO:0000250|UniProtKB:P18068}; Lumenal side
CC {ECO:0000250|UniProtKB:P18068}. Note=Loosely bound to the inner
CC thylakoid membrane surface in chloroplasts (By similarity).
CC -!- SIMILARITY: Belongs to the plastocyanin family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=EAZ35518.1; Type=Frameshift; Evidence={ECO:0000305};
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DR EMBL; AF093636; AAC78108.1; -; mRNA.
DR EMBL; AP002842; BAD67938.1; -; Genomic_DNA.
DR EMBL; AP008212; BAF18444.1; -; Genomic_DNA.
DR EMBL; AP014962; BAS95699.1; -; Genomic_DNA.
DR EMBL; CM000143; EAZ35518.1; ALT_FRAME; Genomic_DNA.
DR EMBL; AK070447; BAG91958.1; -; mRNA.
DR RefSeq; XP_015642952.1; XM_015787466.1.
DR AlphaFoldDB; Q0DFC9; -.
DR SMR; Q0DFC9; -.
DR STRING; 4530.OS06T0101600-01; -.
DR PaxDb; Q0DFC9; -.
DR PRIDE; Q0DFC9; -.
DR EnsemblPlants; Os06t0101600-01; Os06t0101600-01; Os06g0101600.
DR GeneID; 4339833; -.
DR Gramene; Os06t0101600-01; Os06t0101600-01; Os06g0101600.
DR KEGG; osa:4339833; -.
DR eggNOG; ENOG502RXIY; Eukaryota.
DR HOGENOM; CLU_084115_0_0_1; -.
DR InParanoid; Q0DFC9; -.
DR OMA; YDYYCEP; -.
DR OrthoDB; 1543670at2759; -.
DR Proteomes; UP000000763; Chromosome 6.
DR Proteomes; UP000007752; Chromosome 6.
DR Proteomes; UP000059680; Chromosome 6.
DR Genevisible; Q0DFC9; OS.
DR GO; GO:0009535; C:chloroplast thylakoid membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0005507; F:copper ion binding; IEA:InterPro.
DR GO; GO:0009055; F:electron transfer activity; IEA:InterPro.
DR CDD; cd04219; Plastocyanin; 1.
DR Gene3D; 2.60.40.420; -; 1.
DR InterPro; IPR000923; BlueCu_1.
DR InterPro; IPR028871; BlueCu_1_BS.
DR InterPro; IPR001235; Copper_blue_Plastocyanin.
DR InterPro; IPR008972; Cupredoxin.
DR InterPro; IPR002387; Plastocyanin.
DR Pfam; PF00127; Copper-bind; 1.
DR PRINTS; PR00156; COPPERBLUE.
DR PRINTS; PR00157; PLASTOCYANIN.
DR SUPFAM; SSF49503; SSF49503; 1.
DR TIGRFAMs; TIGR02656; cyanin_plasto; 1.
DR PROSITE; PS00196; COPPER_BLUE; 1.
PE 1: Evidence at protein level;
KW Chloroplast; Copper; Direct protein sequencing; Electron transport;
KW Membrane; Metal-binding; Plastid; Reference proteome; Thylakoid;
KW Transit peptide; Transport.
FT TRANSIT 1..57
FT /note="Chloroplast"
FT /evidence="ECO:0000269|PubMed:2780537"
FT CHAIN 58..154
FT /note="Plastocyanin, chloroplastic"
FT /id="PRO_0000002890"
FT DOMAIN 58..154
FT /note="Plastocyanin-like"
FT BINDING 94
FT /ligand="Cu cation"
FT /ligand_id="ChEBI:CHEBI:23378"
FT /evidence="ECO:0000250|UniProtKB:P18068"
FT BINDING 139
FT /ligand="Cu cation"
FT /ligand_id="ChEBI:CHEBI:23378"
FT /evidence="ECO:0000250|UniProtKB:P18068"
FT BINDING 142
FT /ligand="Cu cation"
FT /ligand_id="ChEBI:CHEBI:23378"
FT /evidence="ECO:0000250|UniProtKB:P18068"
FT BINDING 147
FT /ligand="Cu cation"
FT /ligand_id="ChEBI:CHEBI:23378"
FT /evidence="ECO:0000250|UniProtKB:P18068"
SQ SEQUENCE 154 AA; 15577 MW; E45725D25B5F400D CRC64;
MAALSSAAVT IPSMAPSAPG RRRMRSSLVV RASLGKAAGA AAVAVAASAM LAGGAMAQEV
LLGANGGVLV FEPNDFTVKS GETITFKNNA GFPHNVVFDE DAVPSGVDVS KISQEEYLNA
PGETFSVTLT VPGTYGFYCE PHAGAGMVGK VTVN
