PLH16_FORAG
ID PLH16_FORAG Reviewed; 1034 AA.
AC T2KM09;
DT 16-OCT-2019, integrated into UniProtKB/Swiss-Prot.
DT 16-OCT-2019, sequence version 2.
DT 03-AUG-2022, entry version 36.
DE RecName: Full=Putative beta-glucuronidase {ECO:0000305};
DE EC=3.2.1.31 {ECO:0000250|UniProtKB:P05804};
DE AltName: Full=Glycosyl hydrolase 2 family protein P16 {ECO:0000305};
DE Short=P16_GH2 {ECO:0000303|PubMed:31285597};
DE AltName: Full=Polysaccharide utilization locus H protein P16 {ECO:0000303|PubMed:31285597};
DE Short=PUL H protein P16;
GN ORFNames=BN863_22050 {ECO:0000312|EMBL:CDF79917.1};
OS Formosa agariphila (strain DSM 15362 / KCTC 12365 / LMG 23005 / KMM 3901 /
OS M-2Alg 35-1).
OC Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
OC Flavobacteriaceae; Formosa.
OX NCBI_TaxID=1347342;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=DSM 15362 / KCTC 12365 / LMG 23005 / KMM 3901 / M-2Alg 35-1;
RX PubMed=23995932; DOI=10.1128/aem.01937-13;
RA Mann A.J., Hahnke R.L., Huang S., Werner J., Xing P., Barbeyron T.,
RA Huettel B., Stueber K., Reinhardt R., Harder J., Gloeckner F.O.,
RA Amann R.I., Teeling H.;
RT "The genome of the alga-associated marine flavobacterium Formosa agariphila
RT KMM 3901T reveals a broad potential for degradation of algal
RT polysaccharides.";
RL Appl. Environ. Microbiol. 79:6813-6822(2013).
RN [2]
RP REVISION OF GENE MODEL.
RX DOI=10.1016/j.algal.2017.09.025;
RA Salinas A., French C.E.;
RT "The enzymatic ulvan depolymerisation system from the alga-associated
RT marine flavobacterium Formosa agariphila.";
RL Algal Res. 27:335-344(2017).
RN [3]
RP FUNCTION, SUBCELLULAR LOCATION, AND INDUCTION.
RX PubMed=31285597; DOI=10.1038/s41589-019-0311-9;
RA Reisky L., Prechoux A., Zuehlke M.K., Baeumgen M., Robb C.S., Gerlach N.,
RA Roret T., Stanetty C., Larocque R., Michel G., Song T., Markert S.,
RA Unfried F., Mihovilovic M.D., Trautwein-Schult A., Becher D., Schweder T.,
RA Bornscheuer U.T., Hehemann J.H.;
RT "A marine bacterial enzymatic cascade degrades the algal polysaccharide
RT ulvan.";
RL Nat. Chem. Biol. 15:803-812(2019).
CC -!- FUNCTION: Glycoside hydrolase that may be involved in ulvan degradation
CC (Probable). Ulvan is the main polysaccharide component of the Ulvales
CC (green seaweed) cell wall. It is composed of disaccharide building
CC blocks comprising 3-sulfated rhamnose (Rha3S) linked to D-glucuronic
CC acid (GlcA), L-iduronic acid (IduA), or D-xylose (Xyl) (Probable).
CC {ECO:0000305|PubMed:31285597, ECO:0000305|Ref.2}.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=a beta-D-glucuronoside + H2O = an alcohol + D-glucuronate;
CC Xref=Rhea:RHEA:17633, ChEBI:CHEBI:15377, ChEBI:CHEBI:30879,
CC ChEBI:CHEBI:58720, ChEBI:CHEBI:83411; EC=3.2.1.31;
CC Evidence={ECO:0000250|UniProtKB:P05804};
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000305|PubMed:31285597}.
CC -!- INDUCTION: By ulvan and rhamnose. {ECO:0000269|PubMed:31285597}.
CC -!- SIMILARITY: Belongs to the glycosyl hydrolase 2 family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=CDF79917.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305|Ref.2};
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DR EMBL; HG315671; CDF79917.1; ALT_INIT; Genomic_DNA.
DR AlphaFoldDB; T2KM09; -.
DR SMR; T2KM09; -.
DR STRING; 1347342.BN863_22050; -.
DR EnsemblBacteria; CDF79917; CDF79917; BN863_22050.
DR PATRIC; fig|1347342.6.peg.2212; -.
DR eggNOG; COG3250; Bacteria.
DR HOGENOM; CLU_006501_0_1_10; -.
DR OrthoDB; 1832114at2; -.
DR Proteomes; UP000016160; Chromosome.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR GO; GO:0004566; F:beta-glucuronidase activity; IEA:UniProtKB-EC.
DR GO; GO:0030246; F:carbohydrate binding; IEA:InterPro.
DR GO; GO:0016052; P:carbohydrate catabolic process; IEA:UniProt.
DR Gene3D; 2.60.40.10; -; 3.
DR InterPro; IPR036156; Beta-gal/glucu_dom_sf.
DR InterPro; IPR005084; CMB_fam6.
DR InterPro; IPR032311; DUF4982.
DR InterPro; IPR026876; Fn3_assoc_repeat.
DR InterPro; IPR008979; Galactose-bd-like_sf.
DR InterPro; IPR006101; Glyco_hydro_2.
DR InterPro; IPR023232; Glyco_hydro_2_AS.
DR InterPro; IPR006103; Glyco_hydro_2_cat.
DR InterPro; IPR006102; Glyco_hydro_2_Ig-like.
DR InterPro; IPR006104; Glyco_hydro_2_N.
DR InterPro; IPR017853; Glycoside_hydrolase_SF.
DR InterPro; IPR013783; Ig-like_fold.
DR Pfam; PF16355; DUF4982; 1.
DR Pfam; PF13287; Fn3_assoc; 1.
DR Pfam; PF00703; Glyco_hydro_2; 1.
DR Pfam; PF02836; Glyco_hydro_2_C; 1.
DR Pfam; PF02837; Glyco_hydro_2_N; 1.
DR PRINTS; PR00132; GLHYDRLASE2.
DR SUPFAM; SSF49303; SSF49303; 1.
DR SUPFAM; SSF49785; SSF49785; 2.
DR SUPFAM; SSF51445; SSF51445; 1.
DR PROSITE; PS51175; CBM6; 1.
DR PROSITE; PS00608; GLYCOSYL_HYDROL_F2_2; 1.
PE 2: Evidence at transcript level;
KW Cytoplasm; Glycosidase; Hydrolase; Reference proteome.
FT CHAIN 1..1034
FT /note="Putative beta-glucuronidase"
FT /id="PRO_0000448300"
FT DOMAIN 909..1034
FT /note="CBM6"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00523"
FT ACT_SITE 432
FT /note="Proton donor"
FT /evidence="ECO:0000250|UniProtKB:P05804"
SQ SEQUENCE 1034 AA; 117464 MW; 56F7CE10EBF7C731 CRC64;
MHQKIVECIP LWSRNLNSNV KGMRGEGIAC LLIVLCSIIY RTEAQRIETN FNNNWHFILK
DSPDFSKENL DDSSWELLNV PHDWSFEKGV RKGGDQGQGG GYHDGGIGWY RKTFSFSKAS
LSKTTYINFD GVYMNSEVWI NGNRLGKRPY GYISFRYDIS KYLKVGKNTI AVRVDNGLEP
SARWYHSCGI YAPVKLVEVN PTHFKPNTIF IKTPSIEKQQ GVVSIDAEIK GAFKGLKYNV
ELLTANGKVI ATHSEKLASA QPSVQLEVKP PKLWSPESPN LYKAKTQILD GKKVIDEKTT
TFGFRTVAWK TETGFWLNGE NVKLKGVCEH WEGGPVGGAW TKPMLRWKLQ SLKDMGINAI
RPSHNSTPPM FYDICDEIGL LVMDEIFDGW HKKAPEDYGK QAFDEWWQAD VKEWITRDRN
HPSIFVWSLG NETHSDVAPE MVAFGKNLDP TRLFTSGAGN PEDMDIQGVN GGSETKSFIE
NNKLTKPFIS TEAPHTWQTR GYYRTQTWWR DNELSGTYEL PNLTEKEVFF YEGINPKNWK
NRKQRFNSSY DNATVRVSAR KYWEVMRDTP WHSGHFRWTG FDYYGEAGLV HGGLPFNLFM
GGALDVAGFK KDLYYFYQSQ WTEKPMIHML PHWTHPRMKK GTVIPVWVYA NADEVELFLN
GISLGKDKPG TVWNEMQCEW LVPYEEGTLE AVGYINGKVV NRTSFSTAQQ PSKLKTSILK
LDAEGSFTDS FIVTSESLDT AGHLYPYGEN KVYYHIQGDV KKISMENGNP IDPTSRTKSD
FRALFFGKTR TFLRALPEPK EAAVVTAAIL GDKALYTSNL ITIDAQHIQL LGKSKTSDLE
IRYTTNGENP ETHGKLYKDA FMVEDDTTVK AIVKQNGKTV LSMEETFGKN EGLFWGDEHS
ADMWIGRGVD ISAEEGVLTG AAKPSREAHR FKGSGFVDFK GGEGSITWYQ ENDGEPGDYS
IRFRYMHNNH GKLHPMKLYV NDEYVRTIEF EPTGGWEKEW KFVPTIIVLQ SGANNIKLET
TGESGPFIDE LFID