ASTE_ECOLI
ID ASTE_ECOLI Reviewed; 322 AA.
AC P76215; Q2MB41;
DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot.
DT 01-FEB-1997, sequence version 1.
DT 03-AUG-2022, entry version 156.
DE RecName: Full=Succinylglutamate desuccinylase;
DE EC=3.5.1.96 {ECO:0000269|PubMed:9696779};
GN Name=astE; Synonyms=ydjS; OrderedLocusNames=b1744, JW1733;
OS Escherichia coli (strain K12).
OC Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
OC Enterobacteriaceae; Escherichia.
OX NCBI_TaxID=83333;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / MG1655 / ATCC 47076;
RX PubMed=9278503; DOI=10.1126/science.277.5331.1453;
RA Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V.,
RA Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F.,
RA Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B.,
RA Shao Y.;
RT "The complete genome sequence of Escherichia coli K-12.";
RL Science 277:1453-1462(1997).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
RX PubMed=16738553; DOI=10.1038/msb4100049;
RA Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S.,
RA Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.;
RT "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655
RT and W3110.";
RL Mol. Syst. Biol. 2:E1-E5(2006).
RN [3]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 92-322.
RC STRAIN=K12;
RX PubMed=9068658; DOI=10.1128/jb.179.6.2073-2076.1997;
RA Hagenmaier S., Stierhof Y.-D., Henning U.;
RT "A new periplasmic protein of Escherichia coli which is synthesized in
RT spheroplasts but not in intact cells.";
RL J. Bacteriol. 179:2073-2076(1997).
RN [4]
RP FUNCTION, AND CATALYTIC ACTIVITY.
RX PubMed=9696779; DOI=10.1128/jb.180.16.4278-4286.1998;
RA Schneider B.L., Kiupakis A.K., Reitzer L.J.;
RT "Arginine catabolism and the arginine succinyltransferase pathway in
RT Escherichia coli.";
RL J. Bacteriol. 180:4278-4286(1998).
RN [5]
RP PREDICTION OF ZINC-BINDING RESIDUES AND ACTIVE SITE.
RX PubMed=10493853; DOI=10.1006/jmbi.1999.3059;
RA Makarova K.S., Grishin N.V.;
RT "The Zn-peptidase superfamily: functional convergence after evolutionary
RT divergence.";
RL J. Mol. Biol. 292:11-17(1999).
RN [6]
RP INDUCTION.
RX PubMed=12003934; DOI=10.1128/jb.184.11.2940-2950.2002;
RA Kiupakis A.K., Reitzer L.;
RT "ArgR-independent induction and ArgR-dependent superinduction of the
RT astCADBE operon in Escherichia coli.";
RL J. Bacteriol. 184:2940-2950(2002).
RN [7]
RP X-RAY CRYSTALLOGRAPHY (3.1 ANGSTROMS).
RG Northeast structural genomics consortium (NESG);
RT "Crystal structure of succinylglutamate desuccinylase from Escherichia
RT coli, Northeast structural genomics target Et72.";
RL Submitted (MAY-2005) to the PDB data bank.
CC -!- FUNCTION: Transforms N(2)-succinylglutamate into succinate and
CC glutamate. {ECO:0000269|PubMed:9696779}.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=H2O + N-succinyl-L-glutamate = L-glutamate + succinate;
CC Xref=Rhea:RHEA:15169, ChEBI:CHEBI:15377, ChEBI:CHEBI:29985,
CC ChEBI:CHEBI:30031, ChEBI:CHEBI:58763; EC=3.5.1.96;
CC Evidence={ECO:0000269|PubMed:9696779};
CC PhysiologicalDirection=left-to-right; Xref=Rhea:RHEA:15170;
CC Evidence={ECO:0000305|PubMed:9696779};
CC -!- COFACTOR:
CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105; Evidence={ECO:0000250};
CC Note=Binds 1 zinc ion per subunit. {ECO:0000250};
CC -!- PATHWAY: Amino-acid degradation; L-arginine degradation via AST
CC pathway; L-glutamate and succinate from L-arginine: step 5/5.
CC {ECO:0000305|PubMed:9696779}.
CC -!- INTERACTION:
CC P76215; P0ACS9: acrR; NbExp=3; IntAct=EBI-1121806, EBI-1117360;
CC -!- INDUCTION: By nitrogen starvation, and arginine. Induced at stationary
CC phase by sigma S. {ECO:0000269|PubMed:12003934}.
CC -!- SIMILARITY: Belongs to the AspA/AstE family. Succinylglutamate
CC desuccinylase subfamily. {ECO:0000305}.
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DR EMBL; U00096; AAC74814.1; -; Genomic_DNA.
DR EMBL; AP009048; BAE76515.1; -; Genomic_DNA.
DR PIR; H64933; H64933.
DR RefSeq; NP_416258.1; NC_000913.3.
DR RefSeq; WP_000368506.1; NZ_SSZK01000001.1.
DR PDB; 1YW6; X-ray; 3.10 A; A/B=1-322.
DR PDBsum; 1YW6; -.
DR AlphaFoldDB; P76215; -.
DR SMR; P76215; -.
DR BioGRID; 4262239; 18.
DR BioGRID; 850616; 4.
DR IntAct; P76215; 10.
DR STRING; 511145.b1744; -.
DR jPOST; P76215; -.
DR PaxDb; P76215; -.
DR PRIDE; P76215; -.
DR EnsemblBacteria; AAC74814; AAC74814; b1744.
DR EnsemblBacteria; BAE76515; BAE76515; BAE76515.
DR GeneID; 946256; -.
DR KEGG; ecj:JW1733; -.
DR KEGG; eco:b1744; -.
DR PATRIC; fig|1411691.4.peg.512; -.
DR EchoBASE; EB3751; -.
DR eggNOG; COG2988; Bacteria.
DR HOGENOM; CLU_071608_0_0_6; -.
DR InParanoid; P76215; -.
DR OMA; KRYLHSD; -.
DR PhylomeDB; P76215; -.
DR BioCyc; EcoCyc:SUCCGLUDESUCC-MON; -.
DR BioCyc; MetaCyc:SUCCGLUDESUCC-MON; -.
DR BRENDA; 3.5.1.96; 2026.
DR UniPathway; UPA00185; UER00283.
DR EvolutionaryTrace; P76215; -.
DR PRO; PR:P76215; -.
DR Proteomes; UP000000318; Chromosome.
DR Proteomes; UP000000625; Chromosome.
DR GO; GO:0005829; C:cytosol; IBA:GO_Central.
DR GO; GO:0016811; F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; IBA:GO_Central.
DR GO; GO:0016788; F:hydrolase activity, acting on ester bonds; IEA:UniProtKB-UniRule.
DR GO; GO:0009017; F:succinylglutamate desuccinylase activity; IDA:EcoCyc.
DR GO; GO:0008270; F:zinc ion binding; IEA:UniProtKB-UniRule.
DR GO; GO:0019544; P:arginine catabolic process to glutamate; IEA:UniProtKB-UniRule.
DR GO; GO:0019545; P:arginine catabolic process to succinate; IEA:UniProtKB-UniPathway.
DR CDD; cd03855; M14_ASTE; 1.
DR HAMAP; MF_00767; Arg_catab_AstE; 1.
DR InterPro; IPR007036; Aste_AspA.
DR InterPro; IPR016681; SuccinylGlu_desuccinylase.
DR Pfam; PF04952; AstE_AspA; 1.
DR PIRSF; PIRSF017020; AstE; 1.
DR TIGRFAMs; TIGR03242; arg_catab_astE; 1.
PE 1: Evidence at protein level;
KW 3D-structure; Arginine metabolism; Hydrolase; Metal-binding;
KW Reference proteome; Stress response; Zinc.
FT CHAIN 1..322
FT /note="Succinylglutamate desuccinylase"
FT /id="PRO_0000174639"
FT ACT_SITE 210
FT /evidence="ECO:0000255"
FT BINDING 53
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000250"
FT BINDING 56
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000250"
FT BINDING 147
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000250"
FT HELIX 1..10
FT /evidence="ECO:0007829|PDB:1YW6"
FT STRAND 18..30
FT /evidence="ECO:0007829|PDB:1YW6"
FT STRAND 33..40
FT /evidence="ECO:0007829|PDB:1YW6"
FT STRAND 45..50
FT /evidence="ECO:0007829|PDB:1YW6"
FT STRAND 52..55
FT /evidence="ECO:0007829|PDB:1YW6"
FT HELIX 58..71
FT /evidence="ECO:0007829|PDB:1YW6"
FT STRAND 79..84
FT /evidence="ECO:0007829|PDB:1YW6"
FT HELIX 88..91
FT /evidence="ECO:0007829|PDB:1YW6"
FT STRAND 105..110
FT /evidence="ECO:0007829|PDB:1YW6"
FT HELIX 117..134
FT /evidence="ECO:0007829|PDB:1YW6"
FT STRAND 141..147
FT /evidence="ECO:0007829|PDB:1YW6"
FT STRAND 153..161
FT /evidence="ECO:0007829|PDB:1YW6"
FT HELIX 170..178
FT /evidence="ECO:0007829|PDB:1YW6"
FT STRAND 182..186
FT /evidence="ECO:0007829|PDB:1YW6"
FT HELIX 194..201
FT /evidence="ECO:0007829|PDB:1YW6"
FT STRAND 205..210
FT /evidence="ECO:0007829|PDB:1YW6"
FT HELIX 225..236
FT /evidence="ECO:0007829|PDB:1YW6"
FT STRAND 244..246
FT /evidence="ECO:0007829|PDB:1YW6"
FT STRAND 249..255
FT /evidence="ECO:0007829|PDB:1YW6"
FT STRAND 277..279
FT /evidence="ECO:0007829|PDB:1YW6"
FT STRAND 296..302
FT /evidence="ECO:0007829|PDB:1YW6"
FT STRAND 316..321
FT /evidence="ECO:0007829|PDB:1YW6"
SQ SEQUENCE 322 AA; 35800 MW; 6602BAD75AB0A893 CRC64;
MDNFLALTLT GKKPVITERE INGVRWRWLG DGVLELTPLT PPQGALVISA GIHGNETAPV
EMLDALLGAI SHGEIPLRWR LLVILGNPPA LKQGKRYCHS DMNRMFGGRW QLFAESGETC
RARELEQCLE DFYDQGKESV RWHLDLHTAI RGSLHPQFGV LPQRDIPWDE KFLTWLGAAG
LEALVFHQEP GGTFTHFSAR HFGALACTLE LGKALPFGQN DLRQFAVTAS AIAALLSGES
VGIVRTPPLR YRVVSQITRH SPSFEMHMAS DTLNFMPFEK GTLLAQDGEE RFTVTHDVEY
VLFPNPLVAL GLRAGLMLEK IS