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PLXB3_RAT
ID   PLXB3_RAT               Reviewed;        1902 AA.
AC   D3ZLH5;
DT   31-OCT-2012, integrated into UniProtKB/Swiss-Prot.
DT   20-APR-2010, sequence version 1.
DT   03-AUG-2022, entry version 83.
DE   RecName: Full=Plexin-B3 {ECO:0000303|PubMed:20696765};
DE   AltName: Full=Protein Plxnb3;
DE   Flags: Precursor;
GN   Name=Plxnb3;
OS   Rattus norvegicus (Rat).
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae;
OC   Murinae; Rattus.
OX   NCBI_TaxID=10116;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=Brown Norway;
RX   PubMed=15057822; DOI=10.1038/nature02426;
RA   Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J.,
RA   Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G.,
RA   Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G.,
RA   Morgan M., Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G.,
RA   Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S.,
RA   Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T.,
RA   Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D.,
RA   Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L.,
RA   Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D.,
RA   Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M.,
RA   Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C.,
RA   Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J.,
RA   Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H.,
RA   Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X.,
RA   Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q.,
RA   Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P.,
RA   Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A.,
RA   Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C.,
RA   Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J.,
RA   Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J.,
RA   Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F.,
RA   Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A.,
RA   Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A.,
RA   Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J.,
RA   Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E.,
RA   Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M.,
RA   Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C.,
RA   Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L.,
RA   Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W.,
RA   Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y.,
RA   Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V.,
RA   Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M.,
RA   Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S.,
RA   Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B.,
RA   Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R.,
RA   Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J.,
RA   Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D.,
RA   Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S.,
RA   Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S.,
RA   Mockrin S., Collins F.S.;
RT   "Genome sequence of the Brown Norway rat yields insights into mammalian
RT   evolution.";
RL   Nature 428:493-521(2004).
RN   [2] {ECO:0000305}
RP   FUNCTION, TISSUE SPECIFICITY, AND INTERACTION WITH ARHGDIA.
RX   PubMed=20696765; DOI=10.1074/jbc.m110.120451;
RA   Li X., Lee A.Y.;
RT   "Semaphorin 5A and plexin-B3 inhibit human glioma cell motility through
RT   RhoGDIalpha-mediated inactivation of Rac1 GTPase.";
RL   J. Biol. Chem. 285:32436-32445(2010).
CC   -!- FUNCTION: Receptor for SEMA5A that plays a role in axon guidance,
CC       invasive growth and cell migration. Stimulates neurite outgrowth and
CC       mediates Ca(2+)/Mg(2+)-dependent cell aggregation. In glioma cells,
CC       SEMA5A stimulation of PLXNB3 results in the disassembly of F-actin
CC       stress fibers, disruption of focal adhesions and cellular collapse as
CC       well as inhibition of cell migration and invasion through ARHGDIA-
CC       mediated inactivation of RAC1. {ECO:0000269|PubMed:20696765}.
CC   -!- SUBUNIT: Binds MET and MST1R. Interacts with RIT2/RIN. Interacts (via
CC       cytoplasmic domain) with FSCN1 and RAC1. May form homodimers (via Sema
CC       domain) (By similarity). Interacts (via cytoplasmic domain) with
CC       ARHGDIA. {ECO:0000250|UniProtKB:Q9QY40, ECO:0000250|UniProtKB:Q9ULL4,
CC       ECO:0000269|PubMed:20696765}.
CC   -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000250|UniProtKB:Q9ULL4};
CC       Single-pass type I membrane protein {ECO:0000250|UniProtKB:Q9ULL4}.
CC       Note=Colocalizes with RIT2/RIN at the plasma membrane.
CC       {ECO:0000250|UniProtKB:Q9ULL4}.
CC   -!- TISSUE SPECIFICITY: Expressed in glioma cells (at protein level).
CC       Expressed in glioma cells and oligodendrocyte precursor cells.
CC       {ECO:0000269|PubMed:20696765}.
CC   -!- SIMILARITY: Belongs to the plexin family. {ECO:0000255}.
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DR   EMBL; AC096338; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR   RefSeq; NP_001129350.1; NM_001135878.1.
DR   RefSeq; XP_006229649.1; XM_006229587.3.
DR   AlphaFoldDB; D3ZLH5; -.
DR   SMR; D3ZLH5; -.
DR   STRING; 10116.ENSRNOP00000053235; -.
DR   GlyGen; D3ZLH5; 9 sites.
DR   PaxDb; D3ZLH5; -.
DR   PeptideAtlas; D3ZLH5; -.
DR   PRIDE; D3ZLH5; -.
DR   Ensembl; ENSRNOT00000080088; ENSRNOP00000072671; ENSRNOG00000061731.
DR   GeneID; 363517; -.
DR   KEGG; rno:363517; -.
DR   CTD; 5365; -.
DR   RGD; 1560615; Plxnb3.
DR   eggNOG; KOG3610; Eukaryota.
DR   GeneTree; ENSGT01020000230394; -.
DR   HOGENOM; CLU_001436_1_1_1; -.
DR   InParanoid; D3ZLH5; -.
DR   OMA; CPSGENI; -.
DR   OrthoDB; 90434at2759; -.
DR   PhylomeDB; D3ZLH5; -.
DR   TreeFam; TF312962; -.
DR   Reactome; R-RNO-416700; Other semaphorin interactions.
DR   PRO; PR:D3ZLH5; -.
DR   Proteomes; UP000002494; Chromosome X.
DR   Bgee; ENSRNOG00000061731; Expressed in cerebellum and 6 other tissues.
DR   GO; GO:0009986; C:cell surface; ISO:RGD.
DR   GO; GO:0005887; C:integral component of plasma membrane; IBA:GO_Central.
DR   GO; GO:0002116; C:semaphorin receptor complex; IBA:GO_Central.
DR   GO; GO:0098632; F:cell-cell adhesion mediator activity; ISO:RGD.
DR   GO; GO:0019904; F:protein domain specific binding; ISS:UniProtKB.
DR   GO; GO:0051022; F:Rho GDP-dissociation inhibitor binding; ISO:RGD.
DR   GO; GO:0017154; F:semaphorin receptor activity; ISS:UniProtKB.
DR   GO; GO:0060326; P:cell chemotaxis; ISO:RGD.
DR   GO; GO:0007156; P:homophilic cell adhesion via plasma membrane adhesion molecules; ISO:RGD.
DR   GO; GO:0007162; P:negative regulation of cell adhesion; ISS:UniProtKB.
DR   GO; GO:0030336; P:negative regulation of cell migration; IMP:UniProtKB.
DR   GO; GO:0034260; P:negative regulation of GTPase activity; ISS:UniProtKB.
DR   GO; GO:0010593; P:negative regulation of lamellipodium assembly; IMP:UniProtKB.
DR   GO; GO:0050918; P:positive chemotaxis; ISS:UniProtKB.
DR   GO; GO:0050772; P:positive regulation of axonogenesis; IBA:GO_Central.
DR   GO; GO:0001938; P:positive regulation of endothelial cell proliferation; ISO:RGD.
DR   GO; GO:0010976; P:positive regulation of neuron projection development; ISO:RGD.
DR   GO; GO:0030334; P:regulation of cell migration; IBA:GO_Central.
DR   GO; GO:0008360; P:regulation of cell shape; IBA:GO_Central.
DR   GO; GO:0043087; P:regulation of GTPase activity; IBA:GO_Central.
DR   GO; GO:0071526; P:semaphorin-plexin signaling pathway; IMP:UniProtKB.
DR   GO; GO:1902287; P:semaphorin-plexin signaling pathway involved in axon guidance; IBA:GO_Central.
DR   Gene3D; 1.10.506.10; -; 2.
DR   Gene3D; 2.130.10.10; -; 1.
DR   Gene3D; 2.60.40.10; -; 4.
DR   InterPro; IPR013783; Ig-like_fold.
DR   InterPro; IPR014756; Ig_E-set.
DR   InterPro; IPR002909; IPT_dom.
DR   InterPro; IPR031148; Plexin.
DR   InterPro; IPR013548; Plexin_cytoplasmic_RasGAP_dom.
DR   InterPro; IPR002165; Plexin_repeat.
DR   InterPro; IPR016201; PSI.
DR   InterPro; IPR008936; Rho_GTPase_activation_prot.
DR   InterPro; IPR001627; Semap_dom.
DR   InterPro; IPR036352; Semap_dom_sf.
DR   InterPro; IPR041019; TIG1_plexin.
DR   InterPro; IPR041362; TIG2_plexin.
DR   InterPro; IPR015943; WD40/YVTN_repeat-like_dom_sf.
DR   PANTHER; PTHR22625; PTHR22625; 1.
DR   Pfam; PF08337; Plexin_cytopl; 1.
DR   Pfam; PF01437; PSI; 1.
DR   Pfam; PF01403; Sema; 1.
DR   Pfam; PF01833; TIG; 3.
DR   Pfam; PF18020; TIG_2; 1.
DR   Pfam; PF17960; TIG_plexin; 1.
DR   SMART; SM00429; IPT; 3.
DR   SMART; SM00423; PSI; 3.
DR   SMART; SM00630; Sema; 1.
DR   SUPFAM; SSF101912; SSF101912; 1.
DR   SUPFAM; SSF48350; SSF48350; 1.
DR   SUPFAM; SSF81296; SSF81296; 3.
DR   PROSITE; PS51004; SEMA; 1.
PE   1: Evidence at protein level;
KW   Cell membrane; Disulfide bond; Glycoprotein; Membrane; Neurogenesis;
KW   Receptor; Reference proteome; Repeat; Signal; Transmembrane;
KW   Transmembrane helix.
FT   SIGNAL          1..34
FT                   /evidence="ECO:0000255"
FT   CHAIN           35..1902
FT                   /note="Plexin-B3"
FT                   /evidence="ECO:0000255"
FT                   /id="PRO_0000420128"
FT   TOPO_DOM        35..1245
FT                   /note="Extracellular"
FT                   /evidence="ECO:0000255"
FT   TRANSMEM        1246..1266
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TOPO_DOM        1267..1902
FT                   /note="Cytoplasmic"
FT                   /evidence="ECO:0000255"
FT   DOMAIN          35..461
FT                   /note="Sema"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00352,
FT                   ECO:0000305"
FT   DOMAIN          463..515
FT                   /note="PSI 1"
FT                   /evidence="ECO:0000255"
FT   DOMAIN          609..671
FT                   /note="PSI 2"
FT                   /evidence="ECO:0000255"
FT   DOMAIN          776..822
FT                   /note="PSI 3"
FT                   /evidence="ECO:0000255"
FT   DOMAIN          824..913
FT                   /note="IPT/TIG 1"
FT                   /evidence="ECO:0000255"
FT   DOMAIN          915..1001
FT                   /note="IPT/TIG 2"
FT                   /evidence="ECO:0000255"
FT   DOMAIN          1003..1134
FT                   /note="IPT/TIG 3"
FT                   /evidence="ECO:0000255"
FT   REGION          353..372
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   CARBOHYD        41
FT                   /note="N-linked (GlcNAc...) asparagine"
FT                   /evidence="ECO:0000255"
FT   CARBOHYD        221
FT                   /note="N-linked (GlcNAc...) asparagine"
FT                   /evidence="ECO:0000255"
FT   CARBOHYD        416
FT                   /note="N-linked (GlcNAc...) asparagine"
FT                   /evidence="ECO:0000255"
FT   CARBOHYD        469
FT                   /note="N-linked (GlcNAc...) asparagine"
FT                   /evidence="ECO:0000255"
FT   CARBOHYD        791
FT                   /note="N-linked (GlcNAc...) asparagine"
FT                   /evidence="ECO:0000255"
FT   CARBOHYD        889
FT                   /note="N-linked (GlcNAc...) asparagine"
FT                   /evidence="ECO:0000255"
FT   CARBOHYD        946
FT                   /note="N-linked (GlcNAc...) asparagine"
FT                   /evidence="ECO:0000255"
FT   CARBOHYD        1090
FT                   /note="N-linked (GlcNAc...) asparagine"
FT                   /evidence="ECO:0000255"
FT   CARBOHYD        1207
FT                   /note="N-linked (GlcNAc...) asparagine"
FT                   /evidence="ECO:0000255"
FT   DISULFID        88..97
FT                   /evidence="ECO:0000250|UniProtKB:P70207,
FT                   ECO:0000255|PROSITE-ProRule:PRU00352"
FT   DISULFID        122..130
FT                   /evidence="ECO:0000250|UniProtKB:P70207,
FT                   ECO:0000255|PROSITE-ProRule:PRU00352"
FT   DISULFID        257..360
FT                   /evidence="ECO:0000250|UniProtKB:P70207,
FT                   ECO:0000255|PROSITE-ProRule:PRU00352"
FT   DISULFID        273..305
FT                   /evidence="ECO:0000250|UniProtKB:P70207,
FT                   ECO:0000255|PROSITE-ProRule:PRU00352"
FT   DISULFID        323..347
FT                   /evidence="ECO:0000250|UniProtKB:P70207,
FT                   ECO:0000255|PROSITE-ProRule:PRU00352"
FT   DISULFID        464..481
FT                   /evidence="ECO:0000250|UniProtKB:P70207,
FT                   ECO:0000255|PROSITE-ProRule:PRU00352"
FT   DISULFID        470..514
FT                   /evidence="ECO:0000250|UniProtKB:P70207,
FT                   ECO:0000255|PROSITE-ProRule:PRU00352"
FT   DISULFID        473..490
FT                   /evidence="ECO:0000250|UniProtKB:P70207,
FT                   ECO:0000255|PROSITE-ProRule:PRU00352"
FT   DISULFID        484..496
FT                   /evidence="ECO:0000250|UniProtKB:P70207,
FT                   ECO:0000255|PROSITE-ProRule:PRU00352"
FT   DISULFID        551..569
FT                   /evidence="ECO:0000250|UniProtKB:P70207,
FT                   ECO:0000255|PROSITE-ProRule:PRU00352"
SQ   SEQUENCE   1902 AA;  208487 MW;  1884F43ADB4DDBDE CRC64;
     MLTDFLQAPV MAPWSPFSLH LLLLFLLLLP LTRAHRFSVP NASFNHLVLA PDQGKLYVGA
     VNHLFQLSPE LEMESVAITG PVIDSPDCVP FRDLAECPQA QLTDNANQLL LVSSRAQELV
     ACGQVRQGVC EKRRLGDVTQ VLYQAEDPGD GQFVAANTLG VTTVGLVVPL PGRDLLLVAR
     GLAGKLSAGV PPLTVRQLAG PQPFSSEGLG RLVVGDFSDY NNSYVGAFSD AHSAYFVFRR
     RGARAQTEYR SYVARVCLGD VNLYSYVEVP LTCHGQGLIQ AAFLAPDTLL GAFSAGTSQA
     QAALCAFPLA DLDGSMEQAR RLCYTTGGQG PNGMEEATVE YGVTSRCVTL PPDSPESYPC
     GDEHTPSPIA GRQPLEAQPL LQLGQPISAV AALQTDGHTI AFLGDTEGQL HKVFLNSSHG
     QVYHSQQVGP PGSAISPDLL VDNSGDYLYV LTAQQVDRIL VAACPQFPNC TTCLQARDPL
     CGWCILQGRC TRRAECGRAV QPNQWLWSYE DNHCLHIQSL LPAQHPRQEH GQITLSVPGL
     PNLAMDEYFY CAFGDYNSLA QVEEHHVVCA TPPQDRMPPN PPGSDHVTLP LALMFEDVVL
     AATTFSFYDC SAIQALEVAA PCRTCVSSLW RCHWCPQSSH CVYGERCPEG EKAVYSAQEV
     DILVRGPEAC PQVKGLASPQ LVPVGWESHV TLHIENLHYF RGLPALYYCW LELPGKLRKL
     PAFLEETSRN SGLIHCQAQQ FHPSMSQWEL PVPIYVTRGE IQRLDNTGDL HVTLYDCAMG
     HPDCSHCQAA NGSLSCLWCG DGQPACRYGP LCPPGAVEQL CPIPSIDVIE PLTGPPEGGL
     AITILGSNLG QAFNDVRNAV TVAGQPCNPD PSLYRISARI VCVTSPAPNG TSGPVQVAIK
     SRPPGISAQH FTYQDPVLLS LNPQWGPQAG GTQLTIHGQY LQTGGNVSAF VGDQPCPIQE
     PVCPEAIICH TMPQMEPGEA VVFVVFGHVE RKLLTTPFRY TANPQLVEAE PSVSFRGGGR
     VIRVRGTGLD VVWQPLLSVW LEDEFQVKAL GVQAQDVNPR RSCGAPAADP QACIHLESGL
     LQCSTLCSVN SSSLLLCHSP AVPDGALPKR VFFALDNMQV DFASASGGQG FLYQPNPRLA
     PLSHEGITHP YRLKPGHVLD VEGEGLNLGI SKEEVQVHIG DGKCLVKTLT LTHLYCEPPQ
     QAPQPTNGSG TLPQFVVQMG NVRLALGPVQ YEAEPMISTF PVEAQVGLGM GAAMLIAAVL
     LLTLMYRHKS KQALRDYQKV LVQLENLETG VGDQCRKEFT DLMTEMTDLT SDLEASGIPF
     LDYRTYAERA FFPGHVGCPL QPGLEGPGEE GRRVTVCQGL TQLSNLLNSK LFLLTLIHTL
     EEQPSFSQRD RCHVASLLSL ALHSKLEYLT DIMRTLLGDL AAHYVHKNPK LMLRRTETMV
     EKLLTNWLSI CLYAFLKEVA GEPLYMLFRA IKYQVDKGPV DAVTGKAKRT LNDSHLLRED
     VEFRPLTLMA LVGPGAGGAA GNSEVHRVPA RVLDTDTITQ VKEKVLDQIY KGTPFSQRPS
     VHSLDLEWRS GLAGHLTLSD EDLTSVTQNH WKRLNTLQHY KVPDGATVVL IPQLHNGGTV
     SQSLEQTGCH SGENTPMLED GEEGGVRLWH LVKATEETEG AKVRRSSLRE RERERARAKA
     IPEIYLTRLL SMKGTLQKFV DDTFQAILSM NRPVPIAVKY LFDFLDELAE KHGIEDPETL
     HIWKTNSLLL RFWVNALKNP QLIFDVRVSD NEDAILAVIA QTFIDSCMVS EHKVGRDSPV
     NKLLYAREIP RYKQMVEKYY ADIRQSSPAS YQEMNSALAE LSGNYTSAPN CLEALRELYN
     HIHRYYDQII SALEEDPVAQ KMQLACRLQQ VAALVEYKVT DL
 
 
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