PMIR1_ARATH
ID PMIR1_ARATH Reviewed; 1164 AA.
AC F4K5K6; Q0WLI8; Q84W59;
DT 13-APR-2016, integrated into UniProtKB/Swiss-Prot.
DT 28-JUN-2011, sequence version 1.
DT 25-MAY-2022, entry version 69.
DE RecName: Full=Protein PLASTID MOVEMENT IMPAIRED 1-RELATED 1 {ECO:0000303|PubMed:26324877};
GN Name=PMIR1 {ECO:0000303|PubMed:26324877};
GN OrderedLocusNames=At5g20610 {ECO:0000312|Araport:AT5G20610};
GN ORFNames=T1M15 {ECO:0000312|EMBL:AF296832};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702 {ECO:0000312|Proteomes:UP000006548};
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130714; DOI=10.1038/35048507;
RA Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E.,
RA Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M.,
RA Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K.,
RA Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M.,
RA Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L.,
RA O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D.,
RA Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M.,
RA Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L.,
RA Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B.,
RA Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P.,
RA Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M.,
RA Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D.,
RA Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A.,
RA Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I.,
RA Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T.,
RA Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A.,
RA McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U.,
RA Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W.,
RA Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M.,
RA Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S.,
RA Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G.,
RA Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W.,
RA Bevan M., Fransz P.F.;
RT "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.";
RL Nature 408:823-826(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 371-1164.
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 701-1164.
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [5]
RP FUNCTION, AND DISRUPTION PHENOTYPE.
RC STRAIN=cv. Columbia GL1;
RX PubMed=26324877; DOI=10.1104/pp.15.00214;
RA Suetsugu N., Higa T., Kong S.-G., Wada M.;
RT "PLASTID MOVEMENT IMPAIRED1 and PLASTID MOVEMENT IMPAIRED1-RELATED1 mediate
RT photorelocation movements of both chloroplasts and nuclei.";
RL Plant Physiol. 169:1155-1167(2015).
CC -!- FUNCTION: Together with PMI1, necessary for chloroplast and nuclear
CC photorelocation movements via the regulation of chloroplast-actin (cp-
CC actin) filaments in pavement cells. {ECO:0000269|PubMed:26324877}.
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000305|PubMed:26324877}.
CC -!- DISRUPTION PHENOTYPE: Severe defects in both chloroplast and nuclear
CC photorelocation movements resulting from the impaired regulation of
CC chloroplast-actin filaments. {ECO:0000269|PubMed:26324877}.
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DR EMBL; AF296832; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; CP002688; AED92866.1; -; Genomic_DNA.
DR EMBL; AK230211; BAF02019.1; -; mRNA.
DR EMBL; BT004202; AAO42220.1; -; mRNA.
DR RefSeq; NP_197561.1; NM_122068.3.
DR AlphaFoldDB; F4K5K6; -.
DR STRING; 3702.AT5G20610.1; -.
DR iPTMnet; F4K5K6; -.
DR PaxDb; F4K5K6; -.
DR PRIDE; F4K5K6; -.
DR ProteomicsDB; 226192; -.
DR EnsemblPlants; AT5G20610.1; AT5G20610.1; AT5G20610.
DR GeneID; 832183; -.
DR Gramene; AT5G20610.1; AT5G20610.1; AT5G20610.
DR KEGG; ath:AT5G20610; -.
DR Araport; AT5G20610; -.
DR TAIR; locus:2180424; AT5G20610.
DR eggNOG; ENOG502QW28; Eukaryota.
DR HOGENOM; CLU_003931_0_0_1; -.
DR InParanoid; F4K5K6; -.
DR OMA; FQGKSGC; -.
DR OrthoDB; 447862at2759; -.
DR PRO; PR:F4K5K6; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; F4K5K6; baseline and differential.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR GO; GO:0030048; P:actin filament-based movement; IMP:UniProtKB.
DR GO; GO:0009903; P:chloroplast avoidance movement; IMP:UniProtKB.
DR GO; GO:0009902; P:chloroplast relocation; IMP:UniProtKB.
DR GO; GO:0031022; P:nuclear migration along microfilament; IMP:UniProtKB.
DR GO; GO:0009637; P:response to blue light; IMP:UniProtKB.
DR InterPro; IPR019448; NT-C2.
DR InterPro; IPR039614; PMI1-like.
DR InterPro; IPR039822; PMIR1.
DR PANTHER; PTHR33414; PTHR33414; 2.
DR PANTHER; PTHR33414:SF12; PTHR33414:SF12; 2.
DR Pfam; PF10358; NT-C2; 1.
DR PROSITE; PS51840; C2_NT; 1.
PE 2: Evidence at transcript level;
KW Coiled coil; Cytoplasm; Reference proteome.
FT CHAIN 1..1164
FT /note="Protein PLASTID MOVEMENT IMPAIRED 1-RELATED 1"
FT /id="PRO_0000435991"
FT DOMAIN 69..217
FT /note="C2 NT-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01186"
FT REGION 30..54
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 224..268
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 466..486
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1038..1063
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1124..1164
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 33..49
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 224..264
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 832
FT /note="P -> S (in Ref. 4; AAO42220)"
FT /evidence="ECO:0000305"
FT CONFLICT 1107
FT /note="N -> S (in Ref. 3; BAF02019)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 1164 AA; 128156 MW; 171714839CD1815F CRC64;
MSKVNSEESS SSQKLLKEVE KISEALYVNK NPRGSVAGSN KTPTKPLSRS NLAEPKEKKS
FWNWPLRAIN HVRNRRFNCC FSAQVHSIEG LPPIFQDLSL TVHWKRRDES LSTRPAKVSN
GRAEFKDKLT HTCSVYGSRS GPHHSAKYEA KHFLLYVSLV GSPEIDLGKH RMDLTKLLPL
TLEELQDEKS SGKWSTTFQL SGKANGATLS MSFGYTVVGD TRNPASSGST QNFRSSSNVK
QTSNNTGLTR AISAKSSLGN GKSASRRYDH SIVNRESHPL SQNMEEIKDL HEILPAVQSD
LGSSVNTLYQ KFDEEKVDPA NESQFEFDVV TKHIEPVESI SHEKEDANAL QSELVTGNET
VVPFEEIKKA GEVPTAGSDE VGAENFPLEE PLVNGNETDV PFELLKKAGE VPTAGRDEVG
TEILPPEEPL VNGNETDVPF EELMITGEAS IARSEEAVEI VTEELAPEEG NKISPKNEES
VVPKDAEEVM NGEKDLKEMI MKDLESALKS VEMLEATASE DEEDRKKHGD KDKYFITPMK
ETVPSCSRDV AESVACEFLD MLGIEHSPFG LSSESEPESP RERLLREFEM ETLAAGSLFD
FSIEGDDPQL ECDENFPNEY ESDFEEGFDL ASLVHDIEEE YQLEAQARVS HPRAKMLEGL
ETESLMREWG MNENTFQNSP PHNGRDAFHP ADFPVKEPFD LPPLGDGLGP VVQTKNGGFL
RSMNPLLFRN SKAGGSLIMQ VSTPVVVPAE MGSGIMEILQ KLATAGIEKL SMQANKVMPL
DDITGKTMEE VLWETSPTID IGDRDHVSER ESGDASGFVR GGERRTSFAA KPKKFGSSSG
NNNFDSEYVS LEDLAPLAMD QIEALSLEGL RIQSGMSDED APSDITAQSI GDISAFQGKS
GCVGLEGAAG LQLLDIKDDG DDDDDGLMGL SLTLDEWMKL DSGDIGDEDE INERTSKILA
AHHANPLNFI RKGSKGEKRK GKKGRKCGLL GNTFTVALMV QLRDPLRNYE PVGAPMLSLI
QVERLFVPPK PKIYSTVSEL KKTDEEEEAD ASDAKKEEKP MEEQGIPQYK ITEVHLTGMK
SETDKKPWGI TTQQQQVQSG SRWLMANGMG KGNNKLPLMK PKLGSAKPGD KLWSVSGSGS
KWKELGKMGK SNTHIRNPNV IMPK
