POLL2_ARATH
ID POLL2_ARATH Reviewed; 817 AA.
AC Q940Y9; Q8W4D3;
DT 25-JAN-2012, integrated into UniProtKB/Swiss-Prot.
DT 01-DEC-2001, sequence version 1.
DT 03-AUG-2022, entry version 109.
DE RecName: Full=Putative ion channel POLLUX-like 2;
GN OrderedLocusNames=At5g43745; ORFNames=MQD19.8;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RA Kaneko T., Katoh T., Asamizu E., Sato S., Nakamura Y., Kotani H.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. XI.";
RL Submitted (APR-1999) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2).
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000305}; Multi-pass membrane
CC protein {ECO:0000305}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=Q940Y9-1; Sequence=Displayed;
CC Name=2;
CC IsoId=Q940Y9-2; Sequence=VSP_042187;
CC -!- MISCELLANEOUS: [Isoform 2]: May be due to competing acceptor splice
CC sites. {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the castor/pollux (TC 1.A.1.23) family.
CC {ECO:0000305}.
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DR EMBL; AB026651; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; CP002688; AED95004.1; -; Genomic_DNA.
DR EMBL; AY052350; AAK96542.1; -; mRNA.
DR EMBL; AY059653; AAL31146.1; -; mRNA.
DR EMBL; AY062646; AAL32724.1; -; mRNA.
DR EMBL; AY093257; AAM13256.1; -; mRNA.
DR RefSeq; NP_568628.1; NM_123741.3. [Q940Y9-1]
DR AlphaFoldDB; Q940Y9; -.
DR SMR; Q940Y9; -.
DR STRING; 3702.AT5G43745.1; -.
DR PaxDb; Q940Y9; -.
DR PRIDE; Q940Y9; -.
DR ProteomicsDB; 236581; -. [Q940Y9-1]
DR EnsemblPlants; AT5G43745.1; AT5G43745.1; AT5G43745. [Q940Y9-1]
DR GeneID; 834395; -.
DR Gramene; AT5G43745.1; AT5G43745.1; AT5G43745. [Q940Y9-1]
DR KEGG; ath:AT5G43745; -.
DR Araport; AT5G43745; -.
DR TAIR; locus:505006671; AT5G43745.
DR eggNOG; ENOG502QW0U; Eukaryota.
DR HOGENOM; CLU_011206_0_0_1; -.
DR InParanoid; Q940Y9; -.
DR OMA; SVGPKEC; -.
DR OrthoDB; 181406at2759; -.
DR PhylomeDB; Q940Y9; -.
DR PRO; PR:Q940Y9; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q940Y9; baseline and differential.
DR Genevisible; Q940Y9; AT.
DR GO; GO:0009507; C:chloroplast; HDA:TAIR.
DR GO; GO:0009941; C:chloroplast envelope; HDA:TAIR.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0009536; C:plastid; HDA:TAIR.
DR GO; GO:0042170; C:plastid membrane; IDA:TAIR.
DR GO; GO:0006811; P:ion transport; IEA:InterPro.
DR InterPro; IPR044849; CASTOR/POLLUX/SYM8-like.
DR InterPro; IPR010420; CASTOR/POLLUX/SYM8_dom.
DR PANTHER; PTHR31563; PTHR31563; 1.
DR Pfam; PF06241; Castor_Poll_mid; 1.
PE 2: Evidence at transcript level;
KW Alternative splicing; Membrane; Reference proteome; Transmembrane;
KW Transmembrane helix.
FT CHAIN 1..817
FT /note="Putative ion channel POLLUX-like 2"
FT /id="PRO_0000415275"
FT TRANSMEM 165..185
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 220..240
FT /note="Helical"
FT /evidence="ECO:0000255"
FT VAR_SEQ 1..347
FT /note="Missing (in isoform 2)"
FT /evidence="ECO:0000303|PubMed:14593172"
FT /id="VSP_042187"
SQ SEQUENCE 817 AA; 92211 MW; E1E4B4D81A2980B3 CRC64;
MMVAVQLFTW KPLVLLPSQS SRLDRFASFN RSLSLKSLPL GGIGSFRCPG TFKVKSQRTG
DTEPSSSVNL NDFSSILHKS LPYKVVIGCI PLYAVFRIAQ KICQELPRLV QNSVGAGLPF
ACASNSLPTP LKLDVSFPSF QDIRWGLARF LYLFNIQLEK NIGTFLVALM IACVSFVIIG
GLLFFKFRKD LPLEDCLWEA WACLISSSTH LKQKTRIERV IGFVLAIWGI LFYSRLLSTM
TEQFRYNMTK LREGAQMQVL EADHIIICGI NSHLPFILKQ LNSYHEHAVR LGTATARKQR
LLLMSDTPRK QMDKLAEAYS KDFNHIDILT KSCSLNLTKS FERAAASMAR AIIILPTKGD
RYEVDTDAFL SVLALQPIQK MESIPTIVEV SSPNTYDLLK SISGLKVEPV ENVTSKLFVQ
CSRQKDLIKI YRHLLNYSKN VFNLCSFPNL VGTKYRQLRL GFQEVVVCGL LRDGKVNFHP
NDNEELMETD KLLFIAPLNW KKKQLLYTDM KLENITVPTD TRKQVFEKKR SRLSKIIMRP
RKSLSKGSDS VKGPTESILL LGWRGDVVQM IEEFDNYLGP GSSMEILSDV SLEDRRRVGD
SIGSVKIKNI QVSHKVGNPL NYDTLKQTIM RMKSKYRKGK NIPLTILVIS DRDWLLGDPS
RADKQSAYSL LLAESICNKL GVKVHNLASE IVDSKLGKQI TGLKPSLTFI AAEEVMSLVT
AQVAENSELN EVWKDILDAD GDEIYVKDVE LYMKEGENPS FTELSERAWL RREVAIGYIK
GGKKMINPVP KNEPLSLEMD DSLIVISELE GDQPITL
