PP100_ARATH
ID PP100_ARATH Reviewed; 629 AA.
AC Q9CAM8;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-JUN-2001, sequence version 1.
DT 03-AUG-2022, entry version 110.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g63150;
GN OrderedLocusNames=At1g63150; ORFNames=F16M19.13;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC010795; AAG51611.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE34062.1; -; Genomic_DNA.
DR EMBL; CP002684; ANM61191.1; -; Genomic_DNA.
DR EMBL; AY056252; AAL07101.1; -; mRNA.
DR EMBL; BT000997; AAN41397.1; -; mRNA.
DR PIR; A96657; A96657.
DR RefSeq; NP_001323422.1; NM_001334070.1.
DR RefSeq; NP_564809.1; NM_104993.2.
DR AlphaFoldDB; Q9CAM8; -.
DR SMR; Q9CAM8; -.
DR STRING; 3702.AT1G63150.1; -.
DR PaxDb; Q9CAM8; -.
DR PRIDE; Q9CAM8; -.
DR ProteomicsDB; 250485; -.
DR EnsemblPlants; AT1G63150.1; AT1G63150.1; AT1G63150.
DR EnsemblPlants; AT1G63150.2; AT1G63150.2; AT1G63150.
DR GeneID; 842619; -.
DR Gramene; AT1G63150.1; AT1G63150.1; AT1G63150.
DR Gramene; AT1G63150.2; AT1G63150.2; AT1G63150.
DR KEGG; ath:AT1G63150; -.
DR Araport; AT1G63150; -.
DR TAIR; locus:2015213; AT1G63150.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_12_1; -.
DR InParanoid; Q9CAM8; -.
DR OMA; THNIMIR; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9CAM8; -.
DR PRO; PR:Q9CAM8; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9CAM8; baseline and differential.
DR Genevisible; Q9CAM8; AT.
DR Gene3D; 1.25.40.10; -; 7.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF12854; PPR_1; 3.
DR Pfam; PF13041; PPR_2; 6.
DR SUPFAM; SSF48452; SSF48452; 1.
DR TIGRFAMs; TIGR00756; PPR; 13.
DR PROSITE; PS51375; PPR; 15.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..629
FT /note="Pentatricopeptide repeat-containing protein
FT At1g63150"
FT /id="PRO_0000342841"
FT REPEAT 46..81
FT /note="PPR 1"
FT REPEAT 82..116
FT /note="PPR 2"
FT REPEAT 117..151
FT /note="PPR 3"
FT REPEAT 152..186
FT /note="PPR 4"
FT REPEAT 187..221
FT /note="PPR 5"
FT REPEAT 222..256
FT /note="PPR 6"
FT REPEAT 257..291
FT /note="PPR 7"
FT REPEAT 292..326
FT /note="PPR 8"
FT REPEAT 327..361
FT /note="PPR 9"
FT REPEAT 362..396
FT /note="PPR 10"
FT REPEAT 397..431
FT /note="PPR 11"
FT REPEAT 432..466
FT /note="PPR 12"
FT REPEAT 467..501
FT /note="PPR 13"
FT REPEAT 502..532
FT /note="PPR 14"
FT REPEAT 534..568
FT /note="PPR 15"
FT REPEAT 569..603
FT /note="PPR 16"
SQ SEQUENCE 629 AA; 70790 MW; 2968C7BD1C9A1D5A CRC64;
MQRSISLTAK RLFVHWNLQG IGNPPTVPSF FNLCGSGCWE RSFASASGDY REILRNRLSD
IIKVDDAVDL FGDMVKSRPF PSIVEFNKLL SAVAKMNKFE LVISLGEQMQ TLGISHDLYT
YSIFINCFCR RSQLSLALAV LAKMMKLGYE PDIVTLSSLL NGYCHSKRIS DAVALVDQMV
EMGYKPDTFT FTTLIHGLFL HNKASEAVAL VDQMVQRGCQ PDLVTYGTVV NGLCKRGDID
LALNLLNKME AARIKANVVI FNTIIDSLCK YRHVEVAVDL FTEMETKGIR PNVVTYNSLI
NCLCNYGRWS DASRLLSNML EKKINPNVVT FNALIDAFFK EGKLVEAEKL HEEMIQRSID
PDTITYNLLI NGFCMHNRLD EAKQMFKFMV SKDCLPNIQT YNTLINGFCK CKRVEDGVEL
FREMSQRGLV GNTVTYTTII QGFFQAGDCD SAQMVFKQMV SNRVPTDIMT YSILLHGLCS
YGKLDTALVI FKYLQKSEME LNIFIYNTMI EGMCKAGKVG EAWDLFCSLS IKPDVVTYNT
MISGLCSKRL LQEADDLFRK MKEDGTLPNS GTYNTLIRAN LRDCDRAASA ELIKEMRSSG
FVGDASTISL VTNMLHDGRL DKSFLNMLS
