PP102_ARATH
ID PP102_ARATH Reviewed; 577 AA.
AC Q9SH26;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2000, sequence version 1.
DT 25-MAY-2022, entry version 108.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g63400;
GN OrderedLocusNames=At1g63400; ORFNames=F2K11.22;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC008047; AAF19704.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE34095.1; -; Genomic_DNA.
DR PIR; H96659; H96659.
DR RefSeq; NP_176529.1; NM_105019.2.
DR AlphaFoldDB; Q9SH26; -.
DR SMR; Q9SH26; -.
DR STRING; 3702.AT1G63400.1; -.
DR iPTMnet; Q9SH26; -.
DR PaxDb; Q9SH26; -.
DR PRIDE; Q9SH26; -.
DR ProteomicsDB; 250574; -.
DR EnsemblPlants; AT1G63400.1; AT1G63400.1; AT1G63400.
DR GeneID; 842646; -.
DR Gramene; AT1G63400.1; AT1G63400.1; AT1G63400.
DR KEGG; ath:AT1G63400; -.
DR Araport; AT1G63400; -.
DR TAIR; locus:2031301; AT1G63400.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_0_1; -.
DR InParanoid; Q9SH26; -.
DR OMA; CKINEMA; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9SH26; -.
DR PRO; PR:Q9SH26; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9SH26; baseline and differential.
DR Genevisible; Q9SH26; AT.
DR Gene3D; 1.25.40.10; -; 7.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF12854; PPR_1; 1.
DR Pfam; PF13041; PPR_2; 6.
DR TIGRFAMs; TIGR00756; PPR; 13.
DR PROSITE; PS51375; PPR; 15.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..577
FT /note="Pentatricopeptide repeat-containing protein
FT At1g63400"
FT /id="PRO_0000342843"
FT REPEAT 49..83
FT /note="PPR 1"
FT REPEAT 84..118
FT /note="PPR 2"
FT REPEAT 119..153
FT /note="PPR 3"
FT REPEAT 154..188
FT /note="PPR 4"
FT REPEAT 189..223
FT /note="PPR 5"
FT REPEAT 224..258
FT /note="PPR 6"
FT REPEAT 259..293
FT /note="PPR 7"
FT REPEAT 294..328
FT /note="PPR 8"
FT REPEAT 329..363
FT /note="PPR 9"
FT REPEAT 364..398
FT /note="PPR 10"
FT REPEAT 399..433
FT /note="PPR 11"
FT REPEAT 434..468
FT /note="PPR 12"
FT REPEAT 469..503
FT /note="PPR 13"
FT REPEAT 504..538
FT /note="PPR 14"
FT REPEAT 539..573
FT /note="PPR 15"
SQ SEQUENCE 577 AA; 64952 MW; 20C27E84FE3DCA42 CRC64;
MRISISSVVS STTSRFVHRN LQGKGNPRIA PSSIDLCGMC YWGRAFSSGS GDYREILRNG
LHSMKLDDAI GLFGGMVKSR PLPSIFEFNK LLSAIAKMKK FDLVISLGEK MQRLGISHNL
YTYNILINCF CRRSQISLAL ALLGKMMKLG YEPSIVTLSS LLNGYCHGKR ISDAVALVDQ
MVEMGYRPDT ITFTTLIHGL FLHNKASEAV ALVDRMVQRG CQPNLVTYGV VVNGLCKRGD
IDLAFNLLNK MEAAKIEANV VIYSTVIDSL CKYRHEDDAL NLFTEMENKG VRPNVITYSS
LISCLCNYER WSDASRLLSD MIERKINPNV VTFNALIDAF VKEGKLVEAE KLYDEMIKRS
IDPDIFTYSS LINGFCMHDR LDEAKHMFEL MISKDCFPNV VTYNTLINGF CKAKRIDEGV
ELFREMSQRG LVGNTVTYTT LIHGFFQARD CDNAQMVFKQ MVSDGVHPNI MTYNTLLDGL
CKNGKLEKAM VVFEYLQRSK MEPTIYTYNI MIEGMCKAGK VEDGWDLFCS LSLKGVKPDV
IIYNTMISGF CRKGLKEEAD ALFRKMREDG PLPDSGT
