PP103_ARATH
ID PP103_ARATH Reviewed; 666 AA.
AC Q9SH60; Q1PFH0;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-JUL-2008, sequence version 2.
DT 25-MAY-2022, entry version 105.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g64100;
GN OrderedLocusNames=At1g64100; ORFNames=F22C12.14;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
RC STRAIN=cv. Columbia;
RX PubMed=17147637; DOI=10.1111/j.1467-7652.2006.00183.x;
RA Underwood B.A., Vanderhaeghen R., Whitford R., Town C.D., Hilson P.;
RT "Simultaneous high-throughput recombinational cloning of open reading
RT frames in closed and open configurations.";
RL Plant Biotechnol. J. 4:317-324(2006).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=Q9SH60-1; Sequence=Displayed;
CC Name=2;
CC IsoId=Q9SH60-2; Sequence=VSP_034549;
CC -!- MISCELLANEOUS: [Isoform 2]: May be due to intron retention.
CC {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAF24577.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC007764; AAF24577.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002684; AEE34192.1; -; Genomic_DNA.
DR EMBL; CP002684; ANM59148.1; -; Genomic_DNA.
DR EMBL; DQ446393; ABE65739.1; -; mRNA.
DR PIR; F96665; F96665.
DR RefSeq; NP_001319314.1; NM_001334145.1. [Q9SH60-1]
DR RefSeq; NP_564822.1; NM_105083.1. [Q9SH60-1]
DR AlphaFoldDB; Q9SH60; -.
DR SMR; Q9SH60; -.
DR STRING; 3702.AT1G64100.2; -.
DR PaxDb; Q9SH60; -.
DR PRIDE; Q9SH60; -.
DR ProteomicsDB; 249057; -. [Q9SH60-1]
DR EnsemblPlants; AT1G64100.1; AT1G64100.1; AT1G64100. [Q9SH60-1]
DR EnsemblPlants; AT1G64100.3; AT1G64100.3; AT1G64100. [Q9SH60-1]
DR GeneID; 842714; -.
DR Gramene; AT1G64100.1; AT1G64100.1; AT1G64100. [Q9SH60-1]
DR Gramene; AT1G64100.3; AT1G64100.3; AT1G64100. [Q9SH60-1]
DR KEGG; ath:AT1G64100; -.
DR Araport; AT1G64100; -.
DR TAIR; locus:2024537; AT1G64100.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_12_1; -.
DR InParanoid; Q9SH60; -.
DR OMA; TVEWFAT; -.
DR PhylomeDB; Q9SH60; -.
DR PRO; PR:Q9SH60; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9SH60; baseline and differential.
DR Genevisible; Q9SH60; AT.
DR Gene3D; 1.25.40.10; -; 5.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF12854; PPR_1; 1.
DR Pfam; PF13041; PPR_2; 7.
DR TIGRFAMs; TIGR00756; PPR; 14.
DR PROSITE; PS51375; PPR; 15.
PE 2: Evidence at transcript level;
KW Alternative splicing; Reference proteome; Repeat.
FT CHAIN 1..666
FT /note="Pentatricopeptide repeat-containing protein
FT At1g64100"
FT /id="PRO_0000342844"
FT REPEAT 105..139
FT /note="PPR 1"
FT REPEAT 140..174
FT /note="PPR 2"
FT REPEAT 175..209
FT /note="PPR 3"
FT REPEAT 225..259
FT /note="PPR 4"
FT REPEAT 260..294
FT /note="PPR 5"
FT REPEAT 295..329
FT /note="PPR 6"
FT REPEAT 330..364
FT /note="PPR 7"
FT REPEAT 365..399
FT /note="PPR 8"
FT REPEAT 400..430
FT /note="PPR 9"
FT REPEAT 431..465
FT /note="PPR 10"
FT REPEAT 466..500
FT /note="PPR 11"
FT REPEAT 501..535
FT /note="PPR 12"
FT REPEAT 536..570
FT /note="PPR 13"
FT REPEAT 571..605
FT /note="PPR 14"
FT REPEAT 606..640
FT /note="PPR 15"
FT VAR_SEQ 1..216
FT /note="Missing (in isoform 2)"
FT /evidence="ECO:0000303|PubMed:17147637"
FT /id="VSP_034549"
SQ SEQUENCE 666 AA; 75019 MW; 3C5C64EE20C3167F CRC64;
MTLQSQSSHC LNVHSSMVRD IEKCEQKTKR DIEKKNTKSG GVRLNSRRLI HGRVAEKGTK
SLPSLTQVTF EGEELKLKSG SHYFKSLDDA IDFFDYMVRS RPFYTAVDCN KVIGVFVRMN
RPDVAISLYR KMEIRRIPLN IYSFNILIKC FCDCHKLSFS LSTFGKLTKL GFQPDVVTFN
TLLHGLCLED RISEALALFG YMVETGFLEA VALFDQMVEI GLTPVVITFN TLINGLCLEG
RVLEAAALVN KMVGKGLHID VVTYGTIVNG MCKMGDTKSA LNLLSKMEET HIKPDVVIYS
AIIDRLCKDG HHSDAQYLFS EMLEKGIAPN VFTYNCMIDG FCSFGRWSDA QRLLRDMIER
EINPDVLTFN ALISASVKEG KLFEAEKLCD EMLHRCIFPD TVTYNSMIYG FCKHNRFDDA
KHMFDLMASP DVVTFNTIID VYCRAKRVDE GMQLLREISR RGLVANTTTY NTLIHGFCEV
DNLNAAQDLF QEMISHGVCP DTITCNILLY GFCENEKLEE ALELFEVIQM SKIDLDTVAY
NIIIHGMCKG SKVDEAWDLF CSLPIHGVEP DVQTYNVMIS GFCGKSAISD ANVLFHKMKD
NGHEPDNSTY NTLIRGCLKA GEIDKSIELI SEMRSNGFSG DAFTIKMVAD LITDGRLDKS
FSDMLS
