PP104_ARATH
ID PP104_ARATH Reviewed; 552 AA.
AC Q9C7V5;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-JUN-2001, sequence version 1.
DT 03-AUG-2022, entry version 108.
DE RecName: Full=Putative pentatricopeptide repeat-containing protein At1g64310;
GN Name=PCMP-E65; OrderedLocusNames=At1g64310; ORFNames=F15H21.19;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-E subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC066689; AAG51720.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE34225.1; -; Genomic_DNA.
DR PIR; A96667; A96667.
DR RefSeq; NP_176613.1; NM_105105.1.
DR AlphaFoldDB; Q9C7V5; -.
DR SMR; Q9C7V5; -.
DR iPTMnet; Q9C7V5; -.
DR PaxDb; Q9C7V5; -.
DR PRIDE; Q9C7V5; -.
DR ProteomicsDB; 249058; -.
DR EnsemblPlants; AT1G64310.1; AT1G64310.1; AT1G64310.
DR GeneID; 842737; -.
DR Gramene; AT1G64310.1; AT1G64310.1; AT1G64310.
DR KEGG; ath:AT1G64310; -.
DR Araport; AT1G64310; -.
DR TAIR; locus:2014270; AT1G64310.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_37_2_1; -.
DR InParanoid; Q9C7V5; -.
DR OMA; GIHGFCL; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9C7V5; -.
DR PRO; PR:Q9C7V5; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9C7V5; baseline and differential.
DR Genevisible; Q9C7V5; AT.
DR GO; GO:0005739; C:mitochondrion; IEA:GOC.
DR GO; GO:1900864; P:mitochondrial RNA modification; IMP:TAIR.
DR Gene3D; 1.25.40.10; -; 5.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 7.
DR TIGRFAMs; TIGR00756; PPR; 4.
DR PROSITE; PS51375; PPR; 10.
PE 3: Inferred from homology;
KW Reference proteome; Repeat.
FT CHAIN 1..552
FT /note="Putative pentatricopeptide repeat-containing protein
FT At1g64310"
FT /id="PRO_0000342845"
FT REPEAT 39..69
FT /note="PPR 1"
FT REPEAT 70..104
FT /note="PPR 2"
FT REPEAT 105..139
FT /note="PPR 3"
FT REPEAT 140..170
FT /note="PPR 4"
FT REPEAT 171..205
FT /note="PPR 5"
FT REPEAT 206..240
FT /note="PPR 6"
FT REPEAT 241..271
FT /note="PPR 7"
FT REPEAT 272..306
FT /note="PPR 8"
FT REPEAT 307..341
FT /note="PPR 9"
FT REPEAT 342..372
FT /note="PPR 10"
FT REPEAT 373..407
FT /note="PPR 11"
FT REPEAT 408..438
FT /note="PPR 12"
FT REPEAT 444..474
FT /note="PPR 13"
FT REGION 479..552
FT /note="Type E motif; degenerate"
SQ SEQUENCE 552 AA; 61400 MW; 0FCE1EE52DB6000A CRC64;
MASQTQLRLI IYEFTRKIQT RLNTQKLHSF VTKSKLARDP YFATQLARFY ALNDDLISAR
KLFDVFPERS VFLWNSIIRA YAKAHQFTTV LSLFSQILRS DTRPDNFTYA CLARGFSESF
DTKGLRCIHG IAIVSGLGFD QICGSAIVKA YSKAGLIVEA SKLFCSIPDP DLALWNVMIL
GYGCCGFWDK GINLFNLMQH RGHQPNCYTM VALTSGLIDP SLLLVAWSVH AFCLKINLDS
HSYVGCALVN MYSRCMCIAS ACSVFNSISE PDLVACSSLI TGYSRCGNHK EALHLFAELR
MSGKKPDCVL VAIVLGSCAE LSDSVSGKEV HSYVIRLGLE LDIKVCSALI DMYSKCGLLK
CAMSLFAGIP EKNIVSFNSL ILGLGLHGFA STAFEKFTEI LEMGLIPDEI TFSALLCTCC
HSGLLNKGQE IFERMKSEFG IEPQTEHYVY MVKLMGMAGK LEEAFEFVMS LQKPIDSGIL
GALLSCCEVH ENTHLAEVVA ENIHKNGEER RSVYKVMLSN VYARYGRWDE VERLRDGISE
SYGGKLPGIS WF
