PP105_ARATH
ID PP105_ARATH Reviewed; 523 AA.
AC Q0WKZ3; Q9SGV7;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 05-SEP-2006, sequence version 1.
DT 03-AUG-2022, entry version 94.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g64580;
GN OrderedLocusNames=At1g64580; ORFNames=F1N19.15;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAF19688.1; Type=Erroneous gene model prediction; Note=The predicted gene has been split into 2 genes: At1g64580 and At1g64583.; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC009519; AAF19688.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002684; AEE34255.1; -; Genomic_DNA.
DR EMBL; AK230416; BAF02214.1; -; mRNA.
DR PIR; C96669; C96669.
DR RefSeq; NP_176639.2; NM_105133.2.
DR AlphaFoldDB; Q0WKZ3; -.
DR SMR; Q0WKZ3; -.
DR PaxDb; Q0WKZ3; -.
DR PRIDE; Q0WKZ3; -.
DR ProteomicsDB; 249128; -.
DR EnsemblPlants; AT1G64580.1; AT1G64580.1; AT1G64580.
DR GeneID; 842766; -.
DR Gramene; AT1G64580.1; AT1G64580.1; AT1G64580.
DR KEGG; ath:AT1G64580; -.
DR Araport; AT1G64580; -.
DR TAIR; locus:2019454; AT1G64580.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_0_1; -.
DR InParanoid; Q0WKZ3; -.
DR OMA; CEMAREG; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q0WKZ3; -.
DR PRO; PR:Q0WKZ3; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q0WKZ3; baseline and differential.
DR Genevisible; Q0WKZ3; AT.
DR Gene3D; 1.25.40.10; -; 4.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 1.
DR Pfam; PF13041; PPR_2; 5.
DR TIGRFAMs; TIGR00756; PPR; 11.
DR PROSITE; PS51375; PPR; 13.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..523
FT /note="Pentatricopeptide repeat-containing protein
FT At1g64580"
FT /id="PRO_0000342846"
FT REPEAT 43..77
FT /note="PPR 1"
FT REPEAT 78..112
FT /note="PPR 2"
FT REPEAT 113..147
FT /note="PPR 3"
FT REPEAT 148..182
FT /note="PPR 4"
FT REPEAT 183..217
FT /note="PPR 5"
FT REPEAT 218..252
FT /note="PPR 6"
FT REPEAT 253..287
FT /note="PPR 7"
FT REPEAT 288..322
FT /note="PPR 8"
FT REPEAT 323..357
FT /note="PPR 9"
FT REPEAT 358..392
FT /note="PPR 10"
FT REPEAT 393..427
FT /note="PPR 11"
FT REPEAT 428..462
FT /note="PPR 12"
FT REPEAT 463..497
FT /note="PPR 13"
SQ SEQUENCE 523 AA; 59566 MW; 6A6453508D560866 CRC64;
MQRLIPIAFS SSVKGFVRRH YLLLERGNNP ETSLSRSFSG ASHHHHYRER LRNELHCIKF
DDAFSLFCEM LQSRPIPSIV DFTRVLTVIA KMNKFDIVIY LYHKMENLGI SHDLYSFTIL
IHCFCRCSRL SLALALLGKM MKLGFRPSIV TLGSLLNGFC QGNRFQEAVS LVDSMDGFGF
VPNVVIYNTV INGLCKNRDL NNALEVFYCM EKKGIRADAV TYNTLISGLS NSGRWTDAAR
LLRDMVKRKI DPNVIFFTAL IDTFVKEGNL LEARNLYKEM IRRSVVPNVF TYNSLINGFC
IHGCLGDAKY MFDLMVSKGC FPDVVTYNTL ITGFCKSKRV EDGMKLFCEM TYQGLVGDAF
TYNTLIHGYC QAGKLNVAQK VFNRMVDCGV SPDIVTYNIL LDCLCNNGKI EKALVMVEDL
QKSEMDVDII TYNIIIQGLC RTDKLKEAWC LFRSLTRKGV KPDAIAYITM ISGLCRKGLQ
READKLCRRM KEDGFMPSER IYDETLRDHY TSLSAELIKA AHE
