PP108_ARATH
ID PP108_ARATH Reviewed; 743 AA.
AC Q9CAA8;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-JUN-2001, sequence version 1.
DT 03-AUG-2022, entry version 113.
DE RecName: Full=Putative pentatricopeptide repeat-containing protein At1g68930;
GN Name=PCMP-H22; OrderedLocusNames=At1g68930; ORFNames=T6L1.11;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=10809006; DOI=10.1023/a:1006352315928;
RA Aubourg S., Boudet N., Kreis M., Lecharny A.;
RT "In Arabidopsis thaliana, 1% of the genome codes for a novel protein family
RT unique to plants.";
RL Plant Mol. Biol. 42:603-613(2000).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC011665; AAG51585.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE34864.1; -; Genomic_DNA.
DR PIR; H96713; H96713.
DR RefSeq; NP_001319351.1; NM_001334391.1.
DR AlphaFoldDB; Q9CAA8; -.
DR SMR; Q9CAA8; -.
DR PaxDb; Q9CAA8; -.
DR PRIDE; Q9CAA8; -.
DR EnsemblPlants; AT1G68930.1; AT1G68930.1; AT1G68930.
DR GeneID; 843226; -.
DR Gramene; AT1G68930.1; AT1G68930.1; AT1G68930.
DR KEGG; ath:AT1G68930; -.
DR Araport; AT1G68930; -.
DR TAIR; locus:2205425; AT1G68930.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_15_5_1; -.
DR InParanoid; Q9CAA8; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9CAA8; -.
DR PRO; PR:Q9CAA8; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9CAA8; baseline and differential.
DR Genevisible; Q9CAA8; AT.
DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IBA:GO_Central.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; -; 4.
DR InterPro; IPR032867; DYW_dom.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR045215; PPR_prot_plant.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR PANTHER; PTHR24015; PTHR24015; 2.
DR Pfam; PF14432; DYW_deaminase; 1.
DR Pfam; PF01535; PPR; 4.
DR Pfam; PF13041; PPR_2; 3.
DR SUPFAM; SSF48452; SSF48452; 1.
DR TIGRFAMs; TIGR00756; PPR; 8.
DR PROSITE; PS51375; PPR; 16.
PE 3: Inferred from homology;
KW Reference proteome; Repeat.
FT CHAIN 1..743
FT /note="Putative pentatricopeptide repeat-containing protein
FT At1g68930"
FT /id="PRO_0000342849"
FT REPEAT 40..70
FT /note="PPR 1"
FT REPEAT 71..101
FT /note="PPR 2"
FT REPEAT 102..132
FT /note="PPR 3"
FT REPEAT 138..172
FT /note="PPR 4"
FT REPEAT 173..203
FT /note="PPR 5"
FT REPEAT 204..233
FT /note="PPR 6"
FT REPEAT 234..268
FT /note="PPR 7"
FT REPEAT 269..303
FT /note="PPR 8"
FT REPEAT 304..334
FT /note="PPR 9"
FT REPEAT 335..369
FT /note="PPR 10"
FT REPEAT 370..404
FT /note="PPR 11"
FT REPEAT 405..435
FT /note="PPR 12"
FT REPEAT 436..470
FT /note="PPR 13"
FT REPEAT 471..506
FT /note="PPR 14"
FT REPEAT 507..537
FT /note="PPR 15"
FT REGION 542..617
FT /note="Type E motif"
FT REGION 618..648
FT /note="Type E(+) motif"
FT REGION 649..743
FT /note="Type DYW motif"
SQ SEQUENCE 743 AA; 82749 MW; 6D83514C2F6C20BF CRC64;
MASNYYSVQI KQCIGLGARN QSRYVKMIHG NIIRALPYPE TFLYNNIVHA YALMKSSTYA
RRVFDRIPQP NLFSWNNLLL AYSKAGLISE MESTFEKLPD RDGVTWNVLI EGYSLSGLVG
AAVKAYNTMM RDFSANLTRV TLMTMLKLSS SNGHVSLGKQ IHGQVIKLGF ESYLLVGSPL
LYMYANVGCI SDAKKVFYGL DDRNTVMYNS LMGGLLACGM IEDALQLFRG MEKDSVSWAA
MIKGLAQNGL AKEAIECFRE MKVQGLKMDQ YPFGSVLPAC GGLGAINEGK QIHACIIRTN
FQDHIYVGSA LIDMYCKCKC LHYAKTVFDR MKQKNVVSWT AMVVGYGQTG RAEEAVKIFL
DMQRSGIDPD HYTLGQAISA CANVSSLEEG SQFHGKAITS GLIHYVTVSN SLVTLYGKCG
DIDDSTRLFN EMNVRDAVSW TAMVSAYAQF GRAVETIQLF DKMVQHGLKP DGVTLTGVIS
ACSRAGLVEK GQRYFKLMTS EYGIVPSIGH YSCMIDLFSR SGRLEEAMRF INGMPFPPDA
IGWTTLLSAC RNKGNLEIGK WAAESLIELD PHHPAGYTLL SSIYASKGKW DSVAQLRRGM
REKNVKKEPG QSWIKWKGKL HSFSADDESS PYLDQIYAKL EELNNKIIDN GYKPDTSFVH
HDVEEAVKVK MLNYHSERLA IAFGLIFVPS GQPIRVGKNL RVCVDCHNAT KHISSVTGRE
ILVRDAVRFH RFKDGTCSCG DFW
