PP113_ARATH
ID PP113_ARATH Reviewed; 879 AA.
AC Q8GZA6; Q9C987;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2003, sequence version 1.
DT 25-MAY-2022, entry version 111.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g71210, mitochondrial;
DE Flags: Precursor;
GN OrderedLocusNames=At1g71210; ORFNames=F23N20.20;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=11910074; DOI=10.1126/science.1071006;
RA Seki M., Narusaka M., Kamiya A., Ishida J., Satou M., Sakurai T.,
RA Nakajima M., Enju A., Akiyama K., Oono Y., Muramatsu M., Hayashizaki Y.,
RA Kawai J., Carninci P., Itoh M., Ishii Y., Arakawa T., Shibata K.,
RA Shinagawa A., Shinozaki K.;
RT "Functional annotation of a full-length Arabidopsis cDNA collection.";
RL Science 296:141-145(2002).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [5]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
RN [6]
RP IDENTIFICATION BY MASS SPECTROMETRY, AND CLEAVAGE OF TRANSIT PEPTIDE AFTER
RP PHE-44.
RX PubMed=25732537; DOI=10.1093/jxb/erv064;
RA Carrie C., Venne A.S., Zahedi R.P., Soll J.;
RT "Identification of cleavage sites and substrate proteins for two
RT mitochondrial intermediate peptidases in Arabidopsis thaliana.";
RL J. Exp. Bot. 66:2691-2708(2015).
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305|PubMed:25732537}.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAG51690.1; Type=Erroneous initiation; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; AC016972; AAG51690.1; ALT_INIT; Genomic_DNA.
DR EMBL; CP002684; AEE35173.1; -; Genomic_DNA.
DR EMBL; AK117109; BAC41788.1; -; mRNA.
DR EMBL; BT005973; AAO64908.1; -; mRNA.
DR RefSeq; NP_177277.2; NM_105790.3.
DR AlphaFoldDB; Q8GZA6; -.
DR SMR; Q8GZA6; -.
DR STRING; 3702.AT1G71210.1; -.
DR iPTMnet; Q8GZA6; -.
DR PaxDb; Q8GZA6; -.
DR PRIDE; Q8GZA6; -.
DR ProteomicsDB; 249061; -.
DR EnsemblPlants; AT1G71210.1; AT1G71210.1; AT1G71210.
DR GeneID; 843461; -.
DR Gramene; AT1G71210.1; AT1G71210.1; AT1G71210.
DR KEGG; ath:AT1G71210; -.
DR Araport; AT1G71210; -.
DR TAIR; locus:2026316; AT1G71210.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_2_1; -.
DR InParanoid; Q8GZA6; -.
DR OMA; PNRWTFD; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q8GZA6; -.
DR PRO; PR:Q8GZA6; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q8GZA6; baseline and differential.
DR Genevisible; Q8GZA6; AT.
DR GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR GO; GO:0003729; F:mRNA binding; IDA:TAIR.
DR Gene3D; 1.25.40.10; -; 6.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 6.
DR Pfam; PF13041; PPR_2; 1.
DR TIGRFAMs; TIGR00756; PPR; 2.
DR PROSITE; PS51375; PPR; 15.
PE 1: Evidence at protein level;
KW Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..44
FT /note="Mitochondrion"
FT /evidence="ECO:0000269|PubMed:25732537"
FT CHAIN 45..879
FT /note="Pentatricopeptide repeat-containing protein
FT At1g71210, mitochondrial"
FT /id="PRO_0000342854"
FT REPEAT 181..215
FT /note="PPR 1"
FT REPEAT 216..246
FT /note="PPR 2"
FT REPEAT 250..280
FT /note="PPR 3"
FT REPEAT 285..319
FT /note="PPR 4"
FT REPEAT 320..355
FT /note="PPR 5"
FT REPEAT 356..390
FT /note="PPR 6"
FT REPEAT 391..425
FT /note="PPR 7"
FT REPEAT 426..460
FT /note="PPR 8"
FT REPEAT 461..495
FT /note="PPR 9"
FT REPEAT 496..530
FT /note="PPR 10"
FT REPEAT 531..565
FT /note="PPR 11"
FT REPEAT 566..597
FT /note="PPR 12"
FT REPEAT 602..636
FT /note="PPR 13"
FT REPEAT 637..667
FT /note="PPR 14"
FT REPEAT 671..705
FT /note="PPR 15"
FT REPEAT 706..740
FT /note="PPR 16"
SQ SEQUENCE 879 AA; 100431 MW; 4B5E6A984980E171 CRC64;
MLRCWSVTVE RSCEGMLLRR RILSLSASSF RNFTSGNNGD AIPFSTFTKP SSSIAPGDFL
VREWKDWFKH RDVKQSHQLI DRIFDILRAP SNDGDDRAFY LHLSNLRLRL TEKFVLDVLS
HTRYDILCCL KFFDWAARQP GFHHTRATFH AIFKILRGAK LVTLMIDFLD RSVGFESCRH
SLRLCDALVV GYAVAGRTDI ALQHFGNMRF RGLDLDSFGY HVLLNALVEE KCFDSFDVIF
DQISVRGFVC AVTHSILVKK FCKQGKLDEA EDYLRALLPN DPAGCGSGLG ILVDALCSKR
KFQEATKLLD EIKLVGTVNM DRAYNIWIRA LIKAGFLNNP ADFLQKISPL EGCELEVFRY
NSMVFQLLKE NNLDGVYDIL TEMMVRGVSP NKKTMNAALC FFCKAGFVDE ALELYRSRSE
IGFAPTAMSY NYLIHTLCAN ESVEQAYDVL KGAIDRGHFL GGKTFSTLTN ALCWKGKPDM
ARELVIAAAE RDLLPKRIAG CKIISALCDV GKVEDALMIN ELFNKSGVDT SFKMFTSLIY
GSITLMRGDI AAKLIIRMQE KGYTPTRSLY RNVIQCVCEM ESGEKNFFTT LLKFQLSLWE
HKVQAYNLFI EGAGFAGKPK LARLVYDMMD RDGITPTVAS NILMLQSYLK NEKIADALHF
FHDLREQGKT KKRLYQVMIV GLCKANKLDD AMHFLEEMKG EGLQPSIECY EVNIQKLCNE
EKYDEAVGLV NEFRKSGRRI TAFIGNVLLH NAMKSKGVYE AWTRMRNIED KIPEMKSLGE
LIGLFSGRID MEVELKRLDE VIEKCYPLDM YTYNMLLRMI VMNQAEDAYE MVERIARRGY
VPNERTDMIL ERANRILEER NSRSNLGRNG WNSRQRQLE
