PP115_ARATH
ID PP115_ARATH Reviewed; 689 AA.
AC Q9C9I3;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-JUN-2001, sequence version 1.
DT 25-MAY-2022, entry version 107.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g71460, chloroplastic;
DE Flags: Precursor;
GN Name=PCMP-A3; OrderedLocusNames=At1g71460; ORFNames=F26A9.16;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-A subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC016163; AAG51819.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE35203.1; -; Genomic_DNA.
DR RefSeq; NP_177302.1; NM_105815.4.
DR AlphaFoldDB; Q9C9I3; -.
DR SMR; Q9C9I3; -.
DR STRING; 3702.AT1G71460.1; -.
DR PaxDb; Q9C9I3; -.
DR PRIDE; Q9C9I3; -.
DR ProteomicsDB; 250577; -.
DR EnsemblPlants; AT1G71460.1; AT1G71460.1; AT1G71460.
DR GeneID; 843487; -.
DR Gramene; AT1G71460.1; AT1G71460.1; AT1G71460.
DR KEGG; ath:AT1G71460; -.
DR Araport; AT1G71460; -.
DR TAIR; locus:2825319; AT1G71460.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_15_6_1; -.
DR InParanoid; Q9C9I3; -.
DR OMA; FYGSKQR; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9C9I3; -.
DR PRO; PR:Q9C9I3; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9C9I3; baseline and differential.
DR Genevisible; Q9C9I3; AT.
DR GO; GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IBA:GO_Central.
DR GO; GO:0003729; F:mRNA binding; IDA:TAIR.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; -; 5.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR045215; PPR_prot_plant.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR PANTHER; PTHR24015; PTHR24015; 1.
DR Pfam; PF01535; PPR; 3.
DR Pfam; PF13041; PPR_2; 2.
DR Pfam; PF13812; PPR_3; 1.
DR TIGRFAMs; TIGR00756; PPR; 5.
DR PROSITE; PS51375; PPR; 14.
PE 2: Evidence at transcript level;
KW Chloroplast; Plastid; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..49
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN 50..689
FT /note="Pentatricopeptide repeat-containing protein
FT At1g71460, chloroplastic"
FT /id="PRO_0000342856"
FT REPEAT 75..109
FT /note="PPR 1"
FT REPEAT 110..144
FT /note="PPR 2"
FT REPEAT 145..175
FT /note="PPR 3"
FT REPEAT 176..212
FT /note="PPR 4"
FT REPEAT 213..247
FT /note="PPR 5"
FT REPEAT 248..282
FT /note="PPR 6"
FT REPEAT 283..309
FT /note="PPR 7"
FT REPEAT 315..350
FT /note="PPR 8"
FT REPEAT 351..381
FT /note="PPR 9"
FT REPEAT 382..416
FT /note="PPR 10"
FT REPEAT 417..451
FT /note="PPR 11"
FT REPEAT 452..482
FT /note="PPR 12"
FT REPEAT 483..517
FT /note="PPR 13"
FT REPEAT 518..552
FT /note="PPR 14"
FT REPEAT 553..583
FT /note="PPR 15"
FT REPEAT 584..618
FT /note="PPR 16"
FT REPEAT 619..649
FT /note="PPR 17"
FT REPEAT 655..689
FT /note="PPR 18"
FT REGION 15..68
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 689 AA; 77487 MW; 16413082FF846D0D CRC64;
MEVVSSLGIR DLPASLSVTT SLNHRPHRSD KDGAPAKSPI RPSRTRRPST SPAKKPKPFR
ERDAFPSSLP LHSKNPYIIH RDIQIFARQN NLEVALTILD YLEQRGIPVN ATTFSALLEA
CVRRKSLLHG KQVHVHIRIN GLESNEFLRT KLVHMYTACG SVKDAQKVFD ESTSSNVYSW
NALLRGTVIS GKKRYQDVLS TFTEMRELGV DLNVYSLSNV FKSFAGASAL RQGLKTHALA
IKNGLFNSVF LKTSLVDMYF KCGKVGLARR VFDEIVERDI VVWGAMIAGL AHNKRQWEAL
GLFRTMISEE KIYPNSVILT TILPVLGDVK ALKLGKEVHA HVLKSKNYVE QPFVHSGLID
LYCKCGDMAS GRRVFYGSKQ RNAISWTALM SGYAANGRFD QALRSIVWMQ QEGFRPDVVT
IATVLPVCAE LRAIKQGKEI HCYALKNLFL PNVSLVTSLM VMYSKCGVPE YPIRLFDRLE
QRNVKAWTAM IDCYVENCDL RAGIEVFRLM LLSKHRPDSV TMGRVLTVCS DLKALKLGKE
LHGHILKKEF ESIPFVSARI IKMYGKCGDL RSANFSFDAV AVKGSLTWTA IIEAYGCNEL
FRDAINCFEQ MVSRGFTPNT FTFTAVLSIC SQAGFVDEAY RFFNLMLRMY NLQPSEEHYS
LVIELLNRCG RVEEAQRLAV MSSSSSLQT
