PP116_ARATH
ID PP116_ARATH Reviewed; 681 AA.
AC Q9C9I6; Q8GXZ4;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-JUN-2001, sequence version 1.
DT 25-MAY-2022, entry version 124.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g71490;
GN Name=PCMP-E67; OrderedLocusNames=At1g71490; ORFNames=F26A9.13;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
RC STRAIN=cv. Columbia;
RX PubMed=11910074; DOI=10.1126/science.1071006;
RA Seki M., Narusaka M., Kamiya A., Ishida J., Satou M., Sakurai T.,
RA Nakajima M., Enju A., Akiyama K., Oono Y., Muramatsu M., Hayashizaki Y.,
RA Kawai J., Carninci P., Itoh M., Ishii Y., Arakawa T., Shibata K.,
RA Shinagawa A., Shinozaki K.;
RT "Functional annotation of a full-length Arabidopsis cDNA collection.";
RL Science 296:141-145(2002).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
RC STRAIN=cv. Columbia;
RA Shinn P., Chen H., Cheuk R.F., Kim C.J., Ecker J.R.;
RT "Arabidopsis ORF clones.";
RL Submitted (DEC-2004) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=Q9C9I6-1; Sequence=Displayed;
CC Name=2;
CC IsoId=Q9C9I6-2; Sequence=VSP_034550;
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-E subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC016163; AAG51835.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE35207.1; -; Genomic_DNA.
DR EMBL; AK117951; BAC42589.1; -; mRNA.
DR EMBL; BT020313; AAV85668.1; -; mRNA.
DR EMBL; BT020458; AAW30036.1; -; mRNA.
DR RefSeq; NP_177305.1; NM_105818.3. [Q9C9I6-1]
DR AlphaFoldDB; Q9C9I6; -.
DR SMR; Q9C9I6; -.
DR SwissPalm; Q9C9I6; -.
DR PaxDb; Q9C9I6; -.
DR PRIDE; Q9C9I6; -.
DR EnsemblPlants; AT1G71490.1; AT1G71490.1; AT1G71490. [Q9C9I6-1]
DR GeneID; 843490; -.
DR Gramene; AT1G71490.1; AT1G71490.1; AT1G71490. [Q9C9I6-1]
DR KEGG; ath:AT1G71490; -.
DR Araport; AT1G71490; -.
DR TAIR; locus:2825379; AT1G71490.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_15_1_1; -.
DR InParanoid; Q9C9I6; -.
DR OMA; NLQHGQE; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9C9I6; -.
DR PRO; PR:Q9C9I6; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9C9I6; baseline and differential.
DR Genevisible; Q9C9I6; AT.
DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IBA:GO_Central.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; -; 5.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 4.
DR Pfam; PF13041; PPR_2; 4.
DR TIGRFAMs; TIGR00756; PPR; 5.
DR PROSITE; PS51375; PPR; 13.
PE 2: Evidence at transcript level;
KW Alternative splicing; Reference proteome; Repeat.
FT CHAIN 1..681
FT /note="Pentatricopeptide repeat-containing protein
FT At1g71490"
FT /id="PRO_0000342857"
FT REPEAT 108..142
FT /note="PPR 1"
FT REPEAT 143..177
FT /note="PPR 2"
FT REPEAT 178..208
FT /note="PPR 3"
FT REPEAT 209..243
FT /note="PPR 4"
FT REPEAT 244..278
FT /note="PPR 5"
FT REPEAT 279..313
FT /note="PPR 6"
FT REPEAT 314..344
FT /note="PPR 7"
FT REPEAT 345..379
FT /note="PPR 8"
FT REPEAT 380..414
FT /note="PPR 9"
FT REPEAT 416..446
FT /note="PPR 10"
FT REPEAT 447..481
FT /note="PPR 11"
FT REPEAT 482..517
FT /note="PPR 12"
FT REPEAT 518..548
FT /note="PPR 13"
FT REGION 553..628
FT /note="Type E motif"
FT REGION 629..659
FT /note="Type E(+) motif"
FT VAR_SEQ 172..681
FT /note="Missing (in isoform 2)"
FT /evidence="ECO:0000303|PubMed:11910074"
FT /id="VSP_034550"
SQ SEQUENCE 681 AA; 75406 MW; 2B8B211AD5709294 CRC64;
MLSESLFKSL GHLASHGHLH DAFKTFSLLR LQSSSAVSDD LVLHSAASLL SACVDVRAFL
AGVQVHAHCI SSGVEYHSVL VPKLVTFYSA FNLHNEAQSI IENSDILHPL PWNVLIASYA
KNELFEEVIA AYKRMVSKGI RPDAFTYPSV LKACGETLDV AFGRVVHGSI EVSSYKSSLY
VCNALISMYK RFRNMGIARR LFDRMFERDA VSWNAVINCY ASEGMWSEAF ELFDKMWFSG
VEVSVITWNI ISGGCLQTGN YVGALGLISR MRNFPTSLDP VAMIIGLKAC SLIGAIRLGK
EIHGLAIHSS YDGIDNVRNT LITMYSKCKD LRHALIVFRQ TEENSLCTWN SIISGYAQLN
KSEEASHLLR EMLVAGFQPN SITLASILPL CARIANLQHG KEFHCYILRR KCFKDYTMLW
NSLVDVYAKS GKIVAAKQVS DLMSKRDEVT YTSLIDGYGN QGEGGVALAL FKEMTRSGIK
PDHVTVVAVL SACSHSKLVH EGERLFMKMQ CEYGIRPCLQ HFSCMVDLYG RAGFLAKAKD
IIHNMPYKPS GATWATLLNA CHIHGNTQIG KWAAEKLLEM KPENPGYYVL IANMYAAAGS
WSKLAEVRTI MRDLGVKKDP GCAWIDTDSG FSLFSVGDTS SPEACNTYPL LDGLNQLMKD
NAGYAINKVQ SSDEELLQEM G
