PP119_ARATH
ID PP119_ARATH Reviewed; 462 AA.
AC Q9CA73;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-JUN-2001, sequence version 1.
DT 03-AUG-2022, entry version 107.
DE RecName: Full=Putative pentatricopeptide repeat-containing protein At1g74400;
GN Name=PCMP-E68; OrderedLocusNames=At1g74400; ORFNames=F1M20.8;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-E subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC011765; AAG52382.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE35587.1; -; Genomic_DNA.
DR PIR; G96772; G96772.
DR RefSeq; NP_177580.1; NM_106100.2.
DR AlphaFoldDB; Q9CA73; -.
DR SMR; Q9CA73; -.
DR PaxDb; Q9CA73; -.
DR PRIDE; Q9CA73; -.
DR EnsemblPlants; AT1G74400.1; AT1G74400.1; AT1G74400.
DR GeneID; 843781; -.
DR Gramene; AT1G74400.1; AT1G74400.1; AT1G74400.
DR KEGG; ath:AT1G74400; -.
DR Araport; AT1G74400; -.
DR TAIR; locus:2019105; AT1G74400.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_37_2_1; -.
DR InParanoid; Q9CA73; -.
DR OMA; WEEKIML; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9CA73; -.
DR PRO; PR:Q9CA73; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9CA73; baseline and differential.
DR Genevisible; Q9CA73; AT.
DR Gene3D; 1.25.40.10; -; 3.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 5.
DR SUPFAM; SSF48452; SSF48452; 1.
DR TIGRFAMs; TIGR00756; PPR; 3.
DR PROSITE; PS51375; PPR; 9.
PE 3: Inferred from homology;
KW Reference proteome; Repeat.
FT CHAIN 1..462
FT /note="Putative pentatricopeptide repeat-containing protein
FT At1g74400"
FT /id="PRO_0000342860"
FT REPEAT 63..98
FT /note="PPR 1"
FT REPEAT 99..129
FT /note="PPR 2"
FT REPEAT 131..165
FT /note="PPR 3"
FT REPEAT 166..200
FT /note="PPR 4"
FT REPEAT 203..233
FT /note="PPR 5"
FT REPEAT 234..268
FT /note="PPR 6"
FT REPEAT 275..310
FT /note="PPR 7"
FT REPEAT 311..341
FT /note="PPR 8"
FT REGION 346..418
FT /note="Type E motif"
FT REGION 419..452
FT /note="Type E(+) motif"
SQ SEQUENCE 462 AA; 52664 MW; C31F2177BA8A1CCE CRC64;
MRFILRHLHS LGVINKFDSF LLHFHTKSLK SNHTLKQYLE SGEPIKALLD FRHRFRQSPS
FVDSFSVLFA IKVSSAQKAS SLDGRQIHAL VRKLGFNAVI QIQTSLVGFY SSVGDVDYAR
QVFDETPEKQ NIVLWTAMIS AYTENENSVE AIELFKRMEA EKIELDGVIV TVALSACADL
GAVQMGEEIY SRSIKRKRRL AMDLTLRNSL LNMYVKSGET EKARKLFDES MRKDVTTYTS
MIFGYALNGQ AQESLELFKK MKTIDQSQDT VITPNDVTFI GVLMACSHSG LVEEGKRHFK
SMIMDYNLKP REAHFGCMVD LFCRSGHLKD AHEFINQMPI KPNTVIWRTL LGACSLHGNV
ELGEEVQRRI FELDRDHVGD YVALSNIYAS KGMWDEKSKM RDRVRKRRMP GKSWIELGSI
INEFVSGPDN NDEQLMMGEI SEVLRCLVSC MTSFDCVIGK KM