PP121_ARATH
ID PP121_ARATH Reviewed; 895 AA.
AC Q9CA56;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-JUN-2001, sequence version 1.
DT 03-AUG-2022, entry version 109.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g74600, chloroplastic;
DE Flags: Precursor;
GN Name=PCMP-E69; OrderedLocusNames=At1g74600; ORFNames=F1M20.28;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-E subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC011765; AAG52351.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE35614.1; -; Genomic_DNA.
DR PIR; B96775; B96775.
DR RefSeq; NP_177599.1; NM_106119.2.
DR AlphaFoldDB; Q9CA56; -.
DR SMR; Q9CA56; -.
DR STRING; 3702.AT1G74600.1; -.
DR iPTMnet; Q9CA56; -.
DR PaxDb; Q9CA56; -.
DR PRIDE; Q9CA56; -.
DR ProteomicsDB; 249402; -.
DR EnsemblPlants; AT1G74600.1; AT1G74600.1; AT1G74600.
DR GeneID; 843800; -.
DR Gramene; AT1G74600.1; AT1G74600.1; AT1G74600.
DR KEGG; ath:AT1G74600; -.
DR Araport; AT1G74600; -.
DR TAIR; locus:2019130; AT1G74600.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_15_6_1; -.
DR InParanoid; Q9CA56; -.
DR OMA; RSIWSAF; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9CA56; -.
DR PRO; PR:Q9CA56; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9CA56; baseline and differential.
DR Genevisible; Q9CA56; AT.
DR GO; GO:0009507; C:chloroplast; IDA:TAIR.
DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IBA:GO_Central.
DR GO; GO:0005739; C:mitochondrion; IDA:TAIR.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0080156; P:mitochondrial mRNA modification; IMP:TAIR.
DR GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; -; 7.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 7.
DR Pfam; PF13041; PPR_2; 4.
DR SUPFAM; SSF48452; SSF48452; 1.
DR TIGRFAMs; TIGR00756; PPR; 8.
DR PROSITE; PS51375; PPR; 19.
PE 3: Inferred from homology;
KW Chloroplast; Plastid; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..71
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN 72..895
FT /note="Pentatricopeptide repeat-containing protein
FT At1g74600, chloroplastic"
FT /id="PRO_0000342862"
FT REPEAT 83..113
FT /note="PPR 1"
FT REPEAT 114..148
FT /note="PPR 2"
FT REPEAT 149..183
FT /note="PPR 3"
FT REPEAT 184..214
FT /note="PPR 4"
FT REPEAT 215..249
FT /note="PPR 5"
FT REPEAT 250..280
FT /note="PPR 6"
FT REPEAT 284..314
FT /note="PPR 7"
FT REPEAT 315..349
FT /note="PPR 8"
FT REPEAT 350..384
FT /note="PPR 9"
FT REPEAT 385..415
FT /note="PPR 10"
FT REPEAT 417..451
FT /note="PPR 11"
FT REPEAT 452..483
FT /note="PPR 12"
FT REPEAT 484..514
FT /note="PPR 13"
FT REPEAT 515..549
FT /note="PPR 14"
FT REPEAT 550..584
FT /note="PPR 15"
FT REPEAT 585..615
FT /note="PPR 16"
FT REPEAT 616..650
FT /note="PPR 17"
FT REPEAT 651..685
FT /note="PPR 18"
FT REPEAT 686..716
FT /note="PPR 19"
FT REPEAT 717..751
FT /note="PPR 20"
FT REPEAT 752..787
FT /note="PPR 21"
FT REPEAT 788..818
FT /note="PPR 22"
FT REGION 824..895
FT /note="Type E motif; degenerate"
SQ SEQUENCE 895 AA; 98652 MW; 1F15157CDBBBEFA8 CRC64;
MNCLANESLN SLKISPFSTS RLLSSVTNFR NQLSFSSKDS SSSSAPFNPF RFFNDQSNSR
LCNLRTTKIL QAHLLRRYLL PFDVFLTKSL LSWYSNSGSM ADAAKLFDTI PQPDVVSCNI
MISGYKQHRL FEESLRFFSK MHFLGFEANE ISYGSVISAC SALQAPLFSE LVCCHTIKMG
YFFYEVVESA LIDVFSKNLR FEDAYKVFRD SLSANVYCWN TIIAGALRNQ NYGAVFDLFH
EMCVGFQKPD SYTYSSVLAA CASLEKLRFG KVVQARVIKC GAEDVFVCTA IVDLYAKCGH
MAEAMEVFSR IPNPSVVSWT VMLSGYTKSN DAFSALEIFK EMRHSGVEIN NCTVTSVISA
CGRPSMVCEA SQVHAWVFKS GFYLDSSVAA ALISMYSKSG DIDLSEQVFE DLDDIQRQNI
VNVMITSFSQ SKKPGKAIRL FTRMLQEGLR TDEFSVCSLL SVLDCLNLGK QVHGYTLKSG
LVLDLTVGSS LFTLYSKCGS LEESYKLFQG IPFKDNACWA SMISGFNEYG YLREAIGLFS
EMLDDGTSPD ESTLAAVLTV CSSHPSLPRG KEIHGYTLRA GIDKGMDLGS ALVNMYSKCG
SLKLARQVYD RLPELDPVSC SSLISGYSQH GLIQDGFLLF RDMVMSGFTM DSFAISSILK
AAALSDESSL GAQVHAYITK IGLCTEPSVG SSLLTMYSKF GSIDDCCKAF SQINGPDLIA
WTALIASYAQ HGKANEALQV YNLMKEKGFK PDKVTFVGVL SACSHGGLVE ESYFHLNSMV
KDYGIEPENR HYVCMVDALG RSGRLREAES FINNMHIKPD ALVWGTLLAA CKIHGEVELG
KVAAKKAIEL EPSDAGAYIS LSNILAEVGE WDEVEETRKL MKGTGVQKEP GWSSV
