PP123_ARATH
ID PP123_ARATH Reviewed; 855 AA.
AC Q9SSF9;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2000, sequence version 1.
DT 03-AUG-2022, entry version 115.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g74750;
GN OrderedLocusNames=At1g74750; ORFNames=F25A4.28;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC008263; AAD55301.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE35629.1; -; Genomic_DNA.
DR EMBL; CP002684; ANM61095.1; -; Genomic_DNA.
DR EMBL; CP002684; ANM61096.1; -; Genomic_DNA.
DR EMBL; CP002684; ANM61097.1; -; Genomic_DNA.
DR PIR; G96776; G96776.
DR RefSeq; NP_001319382.1; NM_001334663.1.
DR RefSeq; NP_001323334.1; NM_001334665.1.
DR RefSeq; NP_001323335.1; NM_001334664.1.
DR RefSeq; NP_177613.1; NM_106133.2.
DR AlphaFoldDB; Q9SSF9; -.
DR SMR; Q9SSF9; -.
DR STRING; 3702.AT1G74750.1; -.
DR iPTMnet; Q9SSF9; -.
DR PaxDb; Q9SSF9; -.
DR PRIDE; Q9SSF9; -.
DR EnsemblPlants; AT1G74750.1; AT1G74750.1; AT1G74750.
DR EnsemblPlants; AT1G74750.2; AT1G74750.2; AT1G74750.
DR EnsemblPlants; AT1G74750.3; AT1G74750.3; AT1G74750.
DR EnsemblPlants; AT1G74750.4; AT1G74750.4; AT1G74750.
DR GeneID; 843814; -.
DR Gramene; AT1G74750.1; AT1G74750.1; AT1G74750.
DR Gramene; AT1G74750.2; AT1G74750.2; AT1G74750.
DR Gramene; AT1G74750.3; AT1G74750.3; AT1G74750.
DR Gramene; AT1G74750.4; AT1G74750.4; AT1G74750.
DR KEGG; ath:AT1G74750; -.
DR Araport; AT1G74750; -.
DR TAIR; locus:2027212; AT1G74750.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_015575_1_0_1; -.
DR InParanoid; Q9SSF9; -.
DR OMA; CTCAEDE; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9SSF9; -.
DR PRO; PR:Q9SSF9; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9SSF9; baseline and differential.
DR Genevisible; Q9SSF9; AT.
DR Gene3D; 1.25.40.10; -; 3.
DR Gene3D; 3.30.1370.110; -; 1.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR002625; Smr_dom.
DR InterPro; IPR036063; Smr_dom_sf.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 2.
DR Pfam; PF12854; PPR_1; 1.
DR Pfam; PF13041; PPR_2; 3.
DR SMART; SM00463; SMR; 1.
DR SUPFAM; SSF160443; SSF160443; 1.
DR TIGRFAMs; TIGR00756; PPR; 8.
DR PROSITE; PS51375; PPR; 9.
DR PROSITE; PS50828; SMR; 1.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..855
FT /note="Pentatricopeptide repeat-containing protein
FT At1g74750"
FT /id="PRO_0000342864"
FT REPEAT 358..392
FT /note="PPR 1"
FT REPEAT 393..427
FT /note="PPR 2"
FT REPEAT 428..462
FT /note="PPR 3"
FT REPEAT 463..497
FT /note="PPR 4"
FT REPEAT 498..532
FT /note="PPR 5"
FT REPEAT 533..567
FT /note="PPR 6"
FT REPEAT 568..602
FT /note="PPR 7"
FT REPEAT 603..637
FT /note="PPR 8"
FT DOMAIN 755..838
FT /note="Smr"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00321"
FT REGION 21..40
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 855 AA; 94709 MW; 743BDE16446B463A CRC64;
MIRAKHISNL SSSARSFFLS GSRPSAADGN SCTCAEDESG VSKRQQIRTE VVQTGKRASN
LAAGLAGSIL PVEAGKPLVV PKTVEHFTRP SLLPQHVSSP ALPGKADSVN HASAIIKEDV
GVPIGDQIFK AGIGNVNLLS DIANYKIPLS DGTEVVGLPK SCMVDPTRPI SGVKSSNVKV
IRREHLAKVY PRSADRVPIN SSPGTKQASN DVAGKSFEAH DLLSNNVSGK RKIMPQRPYT
DSTRYASGGC DYSVHSSDDR TIISSVEGFG KPSREMMKVT PRTAPTPRQH CNPGYVVENV
SSILRRFKWG HAAEEALHNF GFRMDAYQAN QVLKQMDNYA NALGFFYWLK RQPGFKHDGH
TYTTMVGNLG RAKQFGEINK LLDEMVRDGC KPNTVTYNRL IHSYGRANYL KEAMNVFNQM
QEAGCEPDRV TYCTLIDIHA KAGFLDIAMD MYQRMQEAGL SPDTFTYSVI INCLGKAGHL
PAAHRLFCEM VGQGCTPNLV TFNIMIALHA KARNYETALK LYRDMQNAGF QPDKVTYSIV
MEVLGHCGFL EEAEGVFAEM QRKNWVPDEP VYGLLVDLWG KAGNVDKAWQ WYQAMLQAGL
RPNVPTCNSL LSTFLRVHRM SEAYNLLQSM LALGLHPSLQ TYTLLLSCCT DARSNFDMGF
CGQLMAVSGH PAHMFLLKMP PAGPDGQKVR DHVSNFLDFM HSEDRESKRG LMDAVVDFLH
KSGLKEEAGS VWEVAAGKNV YPDALREKSY SYWLINLHVM SEGTAVIALS RTLAWFRKQM
LVSGDCPSRI DIVTGWGRRS RVTGTSMVRQ AVEELLNIFN FPFFTENGNS GCFVGSGEPL
KNWLLESYVE RMHLL
