PP126_ARATH
ID PP126_ARATH Reviewed; 773 AA.
AC Q9SGQ6; Q9SFW4;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-JUL-2008, sequence version 2.
DT 03-AUG-2022, entry version 117.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g76280;
GN OrderedLocusNames=At1g76280; ORFNames=F15M4.22, T23E18.21;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14993207; DOI=10.1101/gr.1515604;
RA Castelli V., Aury J.-M., Jaillon O., Wincker P., Clepet C., Menard M.,
RA Cruaud C., Quetier F., Scarpelli C., Schaechter V., Temple G., Caboche M.,
RA Weissenbach J., Salanoubat M.;
RT "Whole genome sequence comparisons and 'full-length' cDNA sequences: a
RT combined approach to evaluate and improve Arabidopsis genome annotation.";
RL Genome Res. 14:406-413(2004).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=1;
CC Comment=A number of isoforms are produced. According to EST
CC sequences.;
CC Name=1;
CC IsoId=Q9SGQ6-1; Sequence=Displayed;
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAF16672.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=AAF17637.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC009978; AAF17637.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AC012394; AAF16672.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002684; AEE35818.1; -; Genomic_DNA.
DR EMBL; BX813465; -; NOT_ANNOTATED_CDS; mRNA.
DR PIR; C96790; C96790.
DR RefSeq; NP_177755.3; NM_106278.5. [Q9SGQ6-1]
DR AlphaFoldDB; Q9SGQ6; -.
DR SMR; Q9SGQ6; -.
DR STRING; 3702.AT1G76280.3; -.
DR PaxDb; Q9SGQ6; -.
DR PRIDE; Q9SGQ6; -.
DR ProteomicsDB; 249405; -. [Q9SGQ6-1]
DR EnsemblPlants; AT1G76280.1; AT1G76280.1; AT1G76280. [Q9SGQ6-1]
DR GeneID; 843961; -.
DR Gramene; AT1G76280.1; AT1G76280.1; AT1G76280. [Q9SGQ6-1]
DR KEGG; ath:AT1G76280; -.
DR Araport; AT1G76280; -.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_373582_0_0_1; -.
DR InParanoid; Q9SGQ6; -.
DR PhylomeDB; Q9SGQ6; -.
DR PRO; PR:Q9SGQ6; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9SGQ6; baseline and differential.
DR Genevisible; Q9SGQ6; AT.
DR Gene3D; 1.25.40.10; -; 4.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF13041; PPR_2; 1.
DR Pfam; PF13812; PPR_3; 2.
DR TIGRFAMs; TIGR00756; PPR; 3.
DR PROSITE; PS51375; PPR; 9.
PE 2: Evidence at transcript level;
KW Alternative splicing; Reference proteome; Repeat.
FT CHAIN 1..773
FT /note="Pentatricopeptide repeat-containing protein
FT At1g76280"
FT /id="PRO_0000342867"
FT REPEAT 130..165
FT /note="PPR 1"
FT REPEAT 166..200
FT /note="PPR 2"
FT REPEAT 201..231
FT /note="PPR 3"
FT REPEAT 235..269
FT /note="PPR 4"
FT REPEAT 332..369
FT /note="PPR 5"
FT REPEAT 370..400
FT /note="PPR 6"
FT REPEAT 402..436
FT /note="PPR 7"
FT REPEAT 524..558
FT /note="PPR 8"
FT REPEAT 559..593
FT /note="PPR 9"
FT REPEAT 594..628
FT /note="PPR 10"
FT REPEAT 629..663
FT /note="PPR 11"
SQ SEQUENCE 773 AA; 87759 MW; 32B8DDE042407305 CRC64;
MYRALWLSPL RFIVSSSSSK LTPYVSRGRG LSGIDNGAGC SCSRSVTTMI GNEFIRCQDE
SKILQLQIVD ALRSGERQGA SALLFKLIQG NYSLSADDFH DILYYCARSP DPVFVMETYS
VMCKKEISLD SRSLLFIVKS LCNGGHLDKA SEFIHAVRED DRISPLLPIY NFFLGACART
RSVYHASKCL ELMDQRRVGK NGITYVALLK LAVFQRNLST VNDIWKHYVN HYNLDILSLR
RFIWSFTRLG DLKSAYELLQ HMVYLALRGE FFVKSNRGKL HSTRLYIPVP SKDETGSEKF
AFGVTDRIVD CNSSSKVALP KGHNKILAIR VLRWSFNDVI HACGQSKNSE LAEQLMLQLK
VMQQQNLKPY DSTLATVAAY CSKALQVDLA EHLLDQISEC SYSYPFNNLL AAYDSLDQPE
RAVRVLARMK ELKLRPDMRT YELLFSLFGN VNAPYEEGNM LSQVDCCKRI NAIEMDMMRN
GFQHSPISRL NVLRALGAEG MVNEMIRHLQ KAENLSAHSN MYLGTPTYNI VLHSLLEANE
TDMVINIFKR MKSCGCPADV ATYNIMIDCC SLIHSYKSAC ALVSMMIRDG FSPKAVTFTA
LMKILLNDAN FEEALNLLDQ AALEEIHLDV LSYNTILRKA FEKGMIDVIE YIVEQMHREK
VNPDPTTCHY VFSCYVEKGY HATAIEALNV LSLRMLNEED KESLQDKKIE LEENFVMSED
PEAETKIIEL FRKSEEHLAA ALLNLRWCAM LGGRIIWSED QSPWARALSN KYG
