PP128_ARATH
ID PP128_ARATH Reviewed; 467 AA.
AC Q3ECB8;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 08-NOV-2005, sequence version 1.
DT 03-AUG-2022, entry version 97.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g77170, mitochondrial;
DE Flags: Precursor;
GN Name=PCMP-E21; OrderedLocusNames=At1g77170; ORFNames=T14N5.20;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=10809006; DOI=10.1023/a:1006352315928;
RA Aubourg S., Boudet N., Kreis M., Lecharny A.;
RT "In Arabidopsis thaliana, 1% of the genome codes for a novel protein family
RT unique to plants.";
RL Plant Mol. Biol. 42:603-613(2000).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
RN [5]
RP IDENTIFICATION BY MASS SPECTROMETRY, AND CLEAVAGE OF TRANSIT PEPTIDE AFTER
RP PHE-30.
RX PubMed=25862457; DOI=10.1104/pp.15.00300;
RA Huang S., Nelson C.J., Li L., Taylor N.L., Stroeher E., Peteriet J.,
RA Millar A.H.;
RT "INTERMEDIATE CLEAVAGE PEPTIDASE55 modifies enzyme amino termini and alters
RT protein stability in Arabidopsis mitochondria.";
RL Plant Physiol. 168:415-427(2015).
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305|PubMed:25862457}.
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-E subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; AC004260; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; CP002684; AEE35944.1; -; Genomic_DNA.
DR RefSeq; NP_177842.1; NM_106367.4.
DR AlphaFoldDB; Q3ECB8; -.
DR SMR; Q3ECB8; -.
DR PaxDb; Q3ECB8; -.
DR PRIDE; Q3ECB8; -.
DR ProteomicsDB; 249407; -.
DR EnsemblPlants; AT1G77170.1; AT1G77170.1; AT1G77170.
DR GeneID; 844054; -.
DR Gramene; AT1G77170.1; AT1G77170.1; AT1G77170.
DR KEGG; ath:AT1G77170; -.
DR Araport; AT1G77170; -.
DR TAIR; locus:2195980; AT1G77170.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_0_6_1; -.
DR InParanoid; Q3ECB8; -.
DR OMA; NEYCESG; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q3ECB8; -.
DR PRO; PR:Q3ECB8; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q3ECB8; baseline and differential.
DR Genevisible; Q3ECB8; AT.
DR GO; GO:0009507; C:chloroplast; IBA:GO_Central.
DR GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR GO; GO:1900865; P:chloroplast RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; -; 3.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 5.
DR Pfam; PF13041; PPR_2; 2.
DR TIGRFAMs; TIGR00756; PPR; 3.
DR PROSITE; PS51375; PPR; 10.
PE 2: Evidence at transcript level;
KW Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..30
FT /note="Mitochondrion"
FT /evidence="ECO:0000269|PubMed:25862457"
FT CHAIN 31..467
FT /note="Pentatricopeptide repeat-containing protein
FT At1g77170, mitochondrial"
FT /id="PRO_0000342869"
FT REPEAT 81..115
FT /note="PPR 1"
FT REPEAT 116..150
FT /note="PPR 2"
FT REPEAT 151..181
FT /note="PPR 3"
FT REPEAT 182..216
FT /note="PPR 4"
FT REPEAT 217..251
FT /note="PPR 5"
FT REPEAT 254..284
FT /note="PPR 6"
FT REPEAT 285..319
FT /note="PPR 7"
FT REPEAT 320..350
FT /note="PPR 8"
FT REPEAT 356..386
FT /note="PPR 9"
FT REGION 391..466
FT /note="Type E motif"
SQ SEQUENCE 467 AA; 52657 MW; 2AB540E9C1A3604C CRC64;
MFFSGLISKL HVHGTKRTNH FTIFHRLNHF VTTSSSSVTP LSPQDRNKLL ATLLSNCTSL
ARVRRIHGDI FRSRILDQYP IAFLWNNIMR SYIRHESPLD AIQVYLGMVR STVLPDRYSL
PIVIKAAVQI HDFTLGKELH SVAVRLGFVG DEFCESGFIT LYCKAGEFEN ARKVFDENPE
RKLGSWNAII GGLNHAGRAN EAVEMFVDMK RSGLEPDDFT MVSVTASCGG LGDLSLAFQL
HKCVLQAKTE EKSDIMMLNS LIDMYGKCGR MDLASHIFEE MRQRNVVSWS SMIVGYAANG
NTLEALECFR QMREFGVRPN KITFVGVLSA CVHGGLVEEG KTYFAMMKSE FELEPGLSHY
GCIVDLLSRD GQLKEAKKVV EEMPMKPNVM VWGCLMGGCE KFGDVEMAEW VAPYMVELEP
WNDGVYVVLA NVYALRGMWK DVERVRKLMK TKKVAKIPAY SYASTTF
