PP130_ARATH
ID PP130_ARATH Reviewed; 458 AA.
AC Q1PFC5; Q9FVW8;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 16-MAY-2006, sequence version 1.
DT 03-AUG-2022, entry version 88.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g77405;
GN OrderedLocusNames=At1g77405; ORFNames=F2P24.16;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=17147637; DOI=10.1111/j.1467-7652.2006.00183.x;
RA Underwood B.A., Vanderhaeghen R., Whitford R., Town C.D., Hilson P.;
RT "Simultaneous high-throughput recombinational cloning of open reading
RT frames in closed and open configurations.";
RL Plant Biotechnol. J. 4:317-324(2006).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAG29200.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC078898; AAG29200.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002684; AEE35974.1; -; Genomic_DNA.
DR EMBL; DQ446438; ABE65780.1; -; mRNA.
DR PIR; C96803; C96803.
DR RefSeq; NP_177865.2; NM_106390.3.
DR AlphaFoldDB; Q1PFC5; -.
DR SMR; Q1PFC5; -.
DR STRING; 3702.AT1G77405.1; -.
DR PaxDb; Q1PFC5; -.
DR PRIDE; Q1PFC5; -.
DR ProteomicsDB; 249066; -.
DR EnsemblPlants; AT1G77405.1; AT1G77405.1; AT1G77405.
DR GeneID; 844077; -.
DR Gramene; AT1G77405.1; AT1G77405.1; AT1G77405.
DR KEGG; ath:AT1G77405; -.
DR Araport; AT1G77405; -.
DR TAIR; locus:2825891; AT1G77405.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_0_1; -.
DR InParanoid; Q1PFC5; -.
DR OMA; EANHMFR; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q1PFC5; -.
DR PRO; PR:Q1PFC5; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q1PFC5; baseline and differential.
DR Genevisible; Q1PFC5; AT.
DR Gene3D; 1.25.40.10; -; 2.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 2.
DR Pfam; PF13041; PPR_2; 2.
DR TIGRFAMs; TIGR00756; PPR; 5.
DR PROSITE; PS51375; PPR; 7.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..458
FT /note="Pentatricopeptide repeat-containing protein
FT At1g77405"
FT /id="PRO_0000342871"
FT REPEAT 164..198
FT /note="PPR 1"
FT REPEAT 199..233
FT /note="PPR 2"
FT REPEAT 236..271
FT /note="PPR 3"
FT REPEAT 282..316
FT /note="PPR 4"
FT REPEAT 317..351
FT /note="PPR 5"
FT REPEAT 353..387
FT /note="PPR 6"
FT REPEAT 388..419
FT /note="PPR 7"
SQ SEQUENCE 458 AA; 52995 MW; 487417AEF711C9A1 CRC64;
MKPSQPLCNR IVDQLITAMI QNRPFDAVLA SSTVAKPWTQ QLVSDVLHSI PRFFFISPRS
IGRQKGFRHR SPLKQRNLSD ESQRRRSEVL VLGPGAYMDP KKVSIGLQKA LEFFFWIETH
FGFDHNEITC RDMACLLAKG NDFKGLWDFL RQVSRRENGK NVVTTASITC LMKCLGEEGF
VKEALATFYR MKEYHCKPDV YAYNTIINAL CRVGNFKKAR FLLDQMQLPG FRYPPDTYTY
TILISSYCRY GMQTGCRKAI RRRMWEANRM FREMLFRGFV PDVVTYNCLI DGCCKTNRIG
RALELFEDMK TKGCVPNQVT YNSFIRYYSV TNEIEGAIEM MRTMKKLGHG VPGSSTYTPL
IHALVETRRA AEARDLVVEM VEAGLVPREY TYKLVCDALS SEGLASTLDE ELHKRMREGI
QQRYSRVMKI KPTMARKEVV RKYFHKIDGN QNFAMEEI
