PP131_ARATH
ID PP131_ARATH Reviewed; 576 AA.
AC A3KPF8; O64543;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 03-APR-2007, sequence version 1.
DT 25-MAY-2022, entry version 90.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g79080, chloroplastic;
DE Flags: Precursor;
GN OrderedLocusNames=At1g79080; ORFNames=YUP8H12R.30;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Bautista V.R., Kim C.J., Chen H., Wu S.Y., De Los Reyes C., Ecker J.R.;
RT "Arabidopsis ORF clones.";
RL Submitted (FEB-2007) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAC17075.1; Type=Erroneous initiation; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC002986; AAC17075.1; ALT_INIT; Genomic_DNA.
DR EMBL; CP002684; AEE36201.1; -; Genomic_DNA.
DR EMBL; BT030325; ABO09888.1; -; mRNA.
DR PIR; T01047; T01047.
DR RefSeq; NP_178029.2; NM_106559.3.
DR AlphaFoldDB; A3KPF8; -.
DR SMR; A3KPF8; -.
DR iPTMnet; A3KPF8; -.
DR PaxDb; A3KPF8; -.
DR PRIDE; A3KPF8; -.
DR ProteomicsDB; 249067; -.
DR EnsemblPlants; AT1G79080.1; AT1G79080.1; AT1G79080.
DR GeneID; 844249; -.
DR Gramene; AT1G79080.1; AT1G79080.1; AT1G79080.
DR KEGG; ath:AT1G79080; -.
DR Araport; AT1G79080; -.
DR TAIR; locus:2207415; AT1G79080.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_0_1; -.
DR InParanoid; A3KPF8; -.
DR OMA; IKCLDQM; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; A3KPF8; -.
DR PRO; PR:A3KPF8; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; A3KPF8; baseline and differential.
DR Genevisible; A3KPF8; AT.
DR GO; GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
DR GO; GO:0003729; F:mRNA binding; IDA:TAIR.
DR Gene3D; 1.25.40.10; -; 6.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF12854; PPR_1; 2.
DR Pfam; PF13041; PPR_2; 5.
DR TIGRFAMs; TIGR00756; PPR; 10.
DR PROSITE; PS51375; PPR; 13.
PE 2: Evidence at transcript level;
KW Chloroplast; Plastid; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..37
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN 38..576
FT /note="Pentatricopeptide repeat-containing protein
FT At1g79080, chloroplastic"
FT /id="PRO_0000342872"
FT REPEAT 105..139
FT /note="PPR 1"
FT REPEAT 140..174
FT /note="PPR 2"
FT REPEAT 175..209
FT /note="PPR 3"
FT REPEAT 210..244
FT /note="PPR 4"
FT REPEAT 245..279
FT /note="PPR 5"
FT REPEAT 280..314
FT /note="PPR 6"
FT REPEAT 315..349
FT /note="PPR 7"
FT REPEAT 352..386
FT /note="PPR 8"
FT REPEAT 387..417
FT /note="PPR 9"
FT REPEAT 422..456
FT /note="PPR 10"
FT REPEAT 457..487
FT /note="PPR 11"
FT REPEAT 493..527
FT /note="PPR 12"
FT REPEAT 528..562
FT /note="PPR 13"
SQ SEQUENCE 576 AA; 64012 MW; BDA95B89659F4AA1 CRC64;
MSTLLNSVLS MASPESSPRK AVGFVSHIPS GFLHFSSVSK GVARVLASTQ ITLSPKDSAF
TITGSSWKPD LDSGSFSDDP RSDEPNLSDS FSHLESLVTG GHKPNVAHST QLLYDLCKAN
RLKKAIRVIE LMVSSGIIPD ASAYTYLVNQ LCKRGNVGYA MQLVEKMEDH GYPSNTVTYN
ALVRGLCMLG SLNQSLQFVE RLMQKGLAPN AFTYSFLLEA AYKERGTDEA VKLLDEIIVK
GGEPNLVSYN VLLTGFCKEG RTDDAMALFR ELPAKGFKAN VVSYNILLRC LCCDGRWEEA
NSLLAEMDGG DRAPSVVTYN ILINSLAFHG RTEQALQVLK EMSKGNHQFR VTATSYNPVI
ARLCKEGKVD LVVKCLDEMI YRRCKPNEGT YNAIGSLCEH NSKVQEAFYI IQSLSNKQKC
CTHDFYKSVI TSLCRKGNTF AAFQLLYEMT RCGFDPDAHT YSALIRGLCL EGMFTGAMEV
LSIMEESENC KPTVDNFNAM ILGLCKIRRT DLAMEVFEMM VEKKRMPNET TYAILVEGIA
HEDELELAKE VLDELRLRKV IGQNAVDRIV MQFNLD
