PP132_ARATH
ID PP132_ARATH Reviewed; 836 AA.
AC Q9SAK0;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2000, sequence version 1.
DT 03-AUG-2022, entry version 118.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g79490, mitochondrial;
DE AltName: Full=Protein EMBRYO DEFECTIVE 2217;
DE Flags: Precursor;
GN Name=EMB2217; OrderedLocusNames=At1g79490; ORFNames=T8K14.9;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14993207; DOI=10.1101/gr.1515604;
RA Castelli V., Aury J.-M., Jaillon O., Wincker P., Clepet C., Menard M.,
RA Cruaud C., Quetier F., Scarpelli C., Schaechter V., Temple G., Caboche M.,
RA Weissenbach J., Salanoubat M.;
RT "Whole genome sequence comparisons and 'full-length' cDNA sequences: a
RT combined approach to evaluate and improve Arabidopsis genome annotation.";
RL Genome Res. 14:406-413(2004).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BX817051; Type=Frameshift; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC007202; AAD30226.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE36250.1; -; Genomic_DNA.
DR EMBL; BX817051; -; NOT_ANNOTATED_CDS; mRNA.
DR PIR; B96826; B96826.
DR RefSeq; NP_178067.1; NM_106597.4.
DR AlphaFoldDB; Q9SAK0; -.
DR SMR; Q9SAK0; -.
DR STRING; 3702.AT1G79490.1; -.
DR iPTMnet; Q9SAK0; -.
DR PaxDb; Q9SAK0; -.
DR PRIDE; Q9SAK0; -.
DR ProteomicsDB; 249068; -.
DR EnsemblPlants; AT1G79490.1; AT1G79490.1; AT1G79490.
DR GeneID; 844287; -.
DR Gramene; AT1G79490.1; AT1G79490.1; AT1G79490.
DR KEGG; ath:AT1G79490; -.
DR Araport; AT1G79490; -.
DR TAIR; locus:2206385; AT1G79490.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_009972_0_0_1; -.
DR InParanoid; Q9SAK0; -.
DR OMA; NMTHITQ; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9SAK0; -.
DR PRO; PR:Q9SAK0; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9SAK0; baseline and differential.
DR Genevisible; Q9SAK0; AT.
DR GO; GO:0005739; C:mitochondrion; HDA:TAIR.
DR Gene3D; 1.25.40.10; -; 4.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR033443; PPR_long.
DR InterPro; IPR002625; Smr_dom.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF13812; PPR_3; 1.
DR Pfam; PF17177; PPR_long; 1.
DR SMART; SM00463; SMR; 1.
DR TIGRFAMs; TIGR00756; PPR; 6.
DR PROSITE; PS51375; PPR; 12.
DR PROSITE; PS50828; SMR; 1.
PE 2: Evidence at transcript level;
KW Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..85
FT /note="Mitochondrion"
FT /evidence="ECO:0000255"
FT CHAIN 86..836
FT /note="Pentatricopeptide repeat-containing protein
FT At1g79490, mitochondrial"
FT /id="PRO_0000342873"
FT REPEAT 204..238
FT /note="PPR 1"
FT REPEAT 242..276
FT /note="PPR 2"
FT REPEAT 277..311
FT /note="PPR 3"
FT REPEAT 312..346
FT /note="PPR 4"
FT REPEAT 347..381
FT /note="PPR 5"
FT REPEAT 382..416
FT /note="PPR 6"
FT REPEAT 417..451
FT /note="PPR 7"
FT REPEAT 452..486
FT /note="PPR 8"
FT REPEAT 487..521
FT /note="PPR 9"
FT REPEAT 528..555
FT /note="PPR 10"
FT REPEAT 556..590
FT /note="PPR 11"
FT REPEAT 591..625
FT /note="PPR 12"
FT DOMAIN 710..786
FT /note="Smr"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00321"
FT CONFLICT 582
FT /note="T -> K (in Ref. 3; BX817051)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 836 AA; 94172 MW; 2C0D178A0C9304AD CRC64;
MIRGRTAKVI PRNVIFTLSR SSISESPLIS PSRINPKLAG SFSFNIRLLS YFTVRNGFCP
DCSVPRDPNF VGLTTQCRSI VRRFCSEKIG SSESSGWTEE VEYLDESGSV LHSGKGIRSV
EPGLDDHVMV GGLKKPYMNA SSVAKIVEVV QRWKWGPELE TQLDKLQFVP NMVHITQSLK
IVKEVDAALS LFRWAKKQPW YLPSDECYVV LFDGLNQGRD FVGIQSLFEE MVQDSSSHGD
LSFNAYNQVI QYLAKAEKLE VAFCCFKKAQ ESGCKIDTQT YNNLMMLFLN KGLPYKAFEI
YESMEKTDSL LDGSTYELII PSLAKSGRLD AAFKLFQQMK ERKLRPSFSV FSSLVDSMGK
AGRLDTSMKV YMEMQGFGHR PSATMFVSLI DSYAKAGKLD TALRLWDEMK KSGFRPNFGL
YTMIIESHAK SGKLEVAMTV FKDMEKAGFL PTPSTYSCLL EMHAGSGQVD SAMKIYNSMT
NAGLRPGLSS YISLLTLLAN KRLVDVAGKI LLEMKAMGYS VDVCASDVLM IYIKDASVDL
ALKWLRFMGS SGIKTNNFII RQLFESCMKN GLYDSARPLL ETLVHSAGKV DLVLYTSILA
HLVRCQDEDK ERQLMSILSA TKHKAHAFMC GLFTGPEQRK QPVLTFVREF YQGIDYELEE
GAARYFVNVL LNYLVLMGQI NRARCVWKVA YENKLFPKAI VFDQHIAWSL DVRNLSVGAA
LIAVVHTLHR FRKRMLYYGV VPRRIKLVTG PTLKIVIAQM LSSVESPFEV SKVVLRAPGE
LVMEWFKKPI VQQFLLNEIP SRSDILMHKM NVMFPSSAPE LRSMSPPKPL MSSKAF
