PP135_ARATH
ID PP135_ARATH Reviewed; 596 AA.
AC Q9C977; Q56YX6;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-JUN-2001, sequence version 1.
DT 25-MAY-2022, entry version 119.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g80270, mitochondrial;
DE Flags: Precursor;
GN OrderedLocusNames=At1g80270; ORFNames=F5I6.2;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 381-596.
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (MAR-2005) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC018848; AAG52431.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE36379.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE36380.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE36381.1; -; Genomic_DNA.
DR EMBL; CP002684; ANM59450.1; -; Genomic_DNA.
DR EMBL; CP002684; ANM59451.1; -; Genomic_DNA.
DR EMBL; AY062525; AAL32603.1; -; mRNA.
DR EMBL; AY093307; AAM13306.1; -; mRNA.
DR EMBL; AK221194; BAD95295.1; -; mRNA.
DR PIR; B96834; B96834.
DR RefSeq; NP_001077853.1; NM_001084384.3.
DR RefSeq; NP_001321806.1; NM_001334977.1.
DR RefSeq; NP_001321807.1; NM_001334976.1.
DR RefSeq; NP_178143.1; NM_106676.2.
DR RefSeq; NP_974190.1; NM_202461.3.
DR AlphaFoldDB; Q9C977; -.
DR SMR; Q9C977; -.
DR BioGRID; 29585; 3.
DR IntAct; Q9C977; 1.
DR STRING; 3702.AT1G80270.2; -.
DR iPTMnet; Q9C977; -.
DR PaxDb; Q9C977; -.
DR PRIDE; Q9C977; -.
DR ProteomicsDB; 249411; -.
DR EnsemblPlants; AT1G80270.1; AT1G80270.1; AT1G80270.
DR EnsemblPlants; AT1G80270.2; AT1G80270.2; AT1G80270.
DR EnsemblPlants; AT1G80270.3; AT1G80270.3; AT1G80270.
DR EnsemblPlants; AT1G80270.4; AT1G80270.4; AT1G80270.
DR EnsemblPlants; AT1G80270.5; AT1G80270.5; AT1G80270.
DR GeneID; 844367; -.
DR Gramene; AT1G80270.1; AT1G80270.1; AT1G80270.
DR Gramene; AT1G80270.2; AT1G80270.2; AT1G80270.
DR Gramene; AT1G80270.3; AT1G80270.3; AT1G80270.
DR Gramene; AT1G80270.4; AT1G80270.4; AT1G80270.
DR Gramene; AT1G80270.5; AT1G80270.5; AT1G80270.
DR KEGG; ath:AT1G80270; -.
DR Araport; AT1G80270; -.
DR TAIR; locus:2034215; AT1G80270.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_019802_1_0_1; -.
DR InParanoid; Q9C977; -.
DR OMA; WKVCESN; -.
DR OrthoDB; 494564at2759; -.
DR PhylomeDB; Q9C977; -.
DR PRO; PR:Q9C977; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9C977; baseline and differential.
DR Genevisible; Q9C977; AT.
DR GO; GO:0009941; C:chloroplast envelope; HDA:TAIR.
DR GO; GO:0005739; C:mitochondrion; HDA:TAIR.
DR GO; GO:0003729; F:mRNA binding; IDA:TAIR.
DR Gene3D; 1.25.40.10; -; 3.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 4.
DR Pfam; PF13812; PPR_3; 1.
DR TIGRFAMs; TIGR00756; PPR; 3.
DR PROSITE; PS51375; PPR; 8.
PE 2: Evidence at transcript level;
KW Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..69
FT /note="Mitochondrion"
FT /evidence="ECO:0000255"
FT CHAIN 70..596
FT /note="Pentatricopeptide repeat-containing protein
FT At1g80270, mitochondrial"
FT /id="PRO_0000342876"
FT REPEAT 228..262
FT /note="PPR 1"
FT REPEAT 263..296
FT /note="PPR 2"
FT REPEAT 297..331
FT /note="PPR 3"
FT REPEAT 332..366
FT /note="PPR 4"
FT REPEAT 367..397
FT /note="PPR 5"
FT REPEAT 399..433
FT /note="PPR 6"
FT REPEAT 434..468
FT /note="PPR 7"
FT REPEAT 469..503
FT /note="PPR 8"
FT REPEAT 505..539
FT /note="PPR 9"
FT REGION 62..119
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 101..115
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 554
FT /note="A -> T (in Ref. 4; BAD95295)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 596 AA; 67282 MW; 6FC37112B0954945 CRC64;
MFALSKVLRR TQRLRLGACS AVFSKDIQLG GERSFDSNSI ASTKREAVPR FYEISSLSNR
ALSSSAGTKS DQEEDDLEDG FSELEGSKSG QGSTSSDEDE GKLSADEEEE EELDLIETDV
SRKTVEKKQS ELFKTIVSAP GLSIGSALDK WVEEGNEITR VEIAKAMLQL RRRRMYGRAL
QMSEWLEANK KIEMTERDYA SRLDLTVKIR GLEKGEACMQ KIPKSFKGEV LYRTLLANCV
AAGNVKKSEL VFNKMKDLGF PLSGFTCDQM LLLHKRIDRK KIADVLLLME KENIKPSLLT
YKILIDVKGA TNDISGMEQI LETMKDEGVE LDFQTQALTA RHYSGAGLKD KAEKVLKEME
GESLEANRRA FKDLLSIYAS LGREDEVKRI WKICESKPYF EESLAAIQAF GKLNKVQEAE
AIFEKIVKMD RRASSSTYSV LLRVYVDHKM LSKGKDLVKR MAESGCRIEA TTWDALIKLY
VEAGEVEKAD SLLDKASKQS HTKLMMNSFM YIMDEYSKRG DVHNTEKIFL KMREAGYTSR
LRQFQALMQA YINAKSPAYG MRDRLKADNI FPNKSMAAQL AQGDPFKKTA ISDILD
