PP136_ARATH
ID PP136_ARATH Reviewed; 448 AA.
AC Q9M8M3; Q8RY77;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 03-AUG-2022, entry version 111.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g80550, mitochondrial;
DE Flags: Precursor;
GN OrderedLocusNames=At1g80550; ORFNames=T21F11.12;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 129-448.
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
RN [5]
RP IDENTIFICATION BY MASS SPECTROMETRY, AND CLEAVAGE OF TRANSIT PEPTIDE AFTER
RP LEU-21.
RX PubMed=25732537; DOI=10.1093/jxb/erv064;
RA Carrie C., Venne A.S., Zahedi R.P., Soll J.;
RT "Identification of cleavage sites and substrate proteins for two
RT mitochondrial intermediate peptidases in Arabidopsis thaliana.";
RL J. Exp. Bot. 66:2691-2708(2015).
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305|PubMed:25732537}.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC018849; AAF27119.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE36418.1; -; Genomic_DNA.
DR EMBL; AY074541; AAL69509.1; -; mRNA.
DR PIR; E96837; E96837.
DR RefSeq; NP_178170.1; NM_106703.2.
DR AlphaFoldDB; Q9M8M3; -.
DR SMR; Q9M8M3; -.
DR STRING; 3702.AT1G80550.1; -.
DR PaxDb; Q9M8M3; -.
DR PRIDE; Q9M8M3; -.
DR ProteomicsDB; 249069; -.
DR EnsemblPlants; AT1G80550.1; AT1G80550.1; AT1G80550.
DR GeneID; 844394; -.
DR Gramene; AT1G80550.1; AT1G80550.1; AT1G80550.
DR KEGG; ath:AT1G80550; -.
DR Araport; AT1G80550; -.
DR TAIR; locus:2198908; AT1G80550.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_20_1; -.
DR InParanoid; Q9M8M3; -.
DR OMA; SCYNNDW; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9M8M3; -.
DR PRO; PR:Q9M8M3; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9M8M3; baseline and differential.
DR Genevisible; Q9M8M3; AT.
DR GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR Gene3D; 1.25.40.10; -; 3.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 2.
DR Pfam; PF13041; PPR_2; 2.
DR TIGRFAMs; TIGR00756; PPR; 5.
DR PROSITE; PS51375; PPR; 10.
PE 1: Evidence at protein level;
KW Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..21
FT /note="Mitochondrion"
FT /evidence="ECO:0000269|PubMed:25732537"
FT CHAIN 22..448
FT /note="Pentatricopeptide repeat-containing protein
FT At1g80550, mitochondrial"
FT /id="PRO_0000342877"
FT REPEAT 80..110
FT /note="PPR 1"
FT REPEAT 116..146
FT /note="PPR 2"
FT REPEAT 150..186
FT /note="PPR 3"
FT REPEAT 188..222
FT /note="PPR 4"
FT REPEAT 223..257
FT /note="PPR 5"
FT REPEAT 258..292
FT /note="PPR 6"
FT REPEAT 293..327
FT /note="PPR 7"
FT REPEAT 331..359
FT /note="PPR 8"
FT REPEAT 360..394
FT /note="PPR 9"
FT REPEAT 395..429
FT /note="PPR 10"
SQ SEQUENCE 448 AA; 52511 MW; BA74CBAEC33C177D CRC64;
MLLLRRLNRV RIASPYSVRL LSVKPISNVD DAKFRSQEEE DQSSYDQKTV CEALTCYSND
WQKALEFFNW VERESGFRHT TETFNRVIDI LGKYFEFEIS WALINRMIGN TESVPNHVTF
RIVFKRYVTA HLVQEAIDAY DKLDDFNLRD ETSFYNLVDA LCEHKHVVEA EELCFGKNVI
GNGFSVSNTK IHNLILRGWS KLGWWGKCKE YWKKMDTEGV TKDLFSYSIY MDIMCKSGKP
WKAVKLYKEM KSRRMKLDVV AYNTVIRAIG ASQGVEFGIR VFREMRERGC EPNVATHNTI
IKLLCEDGRM RDAYRMLDEM PKRGCQPDSI TYMCLFSRLE KPSEILSLFG RMIRSGVRPK
MDTYVMLMRK FERWGFLQPV LYVWKTMKES GDTPDSAAYN AVIDALIQKG MLDMAREYEE
EMIERGLSPR RRPELVEKSL DETLVCRE
