PP139_ARATH
ID PP139_ARATH Reviewed; 577 AA.
AC Q9ZU29; Q9ZNT2;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 16-DEC-2008, sequence version 2.
DT 25-MAY-2022, entry version 108.
DE RecName: Full=Pentatricopeptide repeat-containing protein At2g01390;
GN OrderedLocusNames=At2g01390/At2g01380; ORFNames=F10A8.29, F2I9.1;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 361-577.
RC STRAIN=cv. Columbia;
RG Center for eukaryotic structural genomics (CESG);
RL Submitted (SEP-2004) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAC67316.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=AAD14538.1; Type=Erroneous gene model prediction; Note=Was originally thought to correspond to two different genes At2g01380 and At2g01390.; Evidence={ECO:0000305};
CC Sequence=AAM15140.1; Type=Erroneous gene model prediction; Note=Was originally thought to correspond to two different genes At2g01380 and At2g01390.; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC005560; AAC67316.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AC006200; AAD14538.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AC006200; AAM15140.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002685; AEC05445.1; -; Genomic_DNA.
DR EMBL; BT012081; -; NOT_ANNOTATED_CDS; mRNA.
DR PIR; A84424; A84424.
DR PIR; B84424; B84424.
DR RefSeq; NP_178248.2; NM_126200.3.
DR AlphaFoldDB; Q9ZU29; -.
DR SMR; Q9ZU29; -.
DR STRING; 3702.AT2G01390.1; -.
DR PaxDb; Q9ZU29; -.
DR PRIDE; Q9ZU29; -.
DR ProteomicsDB; 250489; -.
DR DNASU; 814667; -.
DR EnsemblPlants; AT2G01390.1; AT2G01390.1; AT2G01390.
DR GeneID; 814667; -.
DR Gramene; AT2G01390.1; AT2G01390.1; AT2G01390.
DR KEGG; ath:AT2G01390; -.
DR Araport; AT2G01390; -.
DR TAIR; locus:2038841; AT2G01390.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_036546_0_0_1; -.
DR InParanoid; Q9ZU29; -.
DR OMA; MHWLAHA; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9ZU29; -.
DR PRO; PR:Q9ZU29; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; Q9ZU29; baseline and differential.
DR Genevisible; Q9ZU29; AT.
DR Gene3D; 1.25.40.10; -; 3.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 1.
DR Pfam; PF13041; PPR_2; 3.
DR Pfam; PF13812; PPR_3; 1.
DR TIGRFAMs; TIGR00756; PPR; 5.
DR PROSITE; PS51375; PPR; 9.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..577
FT /note="Pentatricopeptide repeat-containing protein
FT At2g01390"
FT /id="PRO_0000355999"
FT REPEAT 121..155
FT /note="PPR 1"
FT REPEAT 156..190
FT /note="PPR 2"
FT REPEAT 191..225
FT /note="PPR 3"
FT REPEAT 226..260
FT /note="PPR 4"
FT REPEAT 261..295
FT /note="PPR 5"
FT REPEAT 382..416
FT /note="PPR 6"
FT REPEAT 417..451
FT /note="PPR 7"
FT REPEAT 452..482
FT /note="PPR 8"
FT REPEAT 485..519
FT /note="PPR 9"
FT REPEAT 520..554
FT /note="PPR 10"
FT CONFLICT 487
FT /note="A -> V (in Ref. 3; BT012081)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 577 AA; 65603 MW; 736BAD15B3BCE598 CRC64;
MRFSSIFRNT PIQFSNRRSS VKLLHSLPRL KPTNSKRFSQ KPKLVKTQTL PDPSVYTRDI
VSNIYNILKY SNWDSAQEQL PHLGVRWDSH IINRVLKAHP PMQKAWLFFN WAAQIKGFKH
DHFTYTTMLD IFGEAGRIQS MYSVFHLMKE KGVLIDTVTY TSLIHWVSSS GDVDGAMRLW
EEMRDNGCEP TVVSYTAYMK MLFADGRVEE ATEVYKEMLR SRVSPNCHTY TVLMEYLVAT
GKCEEALDIF FKMQEIGVQP DKAACNILIA KALKFGETSF MTRVLVYMKE NGVVLRYPIF
VEALETLKAA GESDDLLREV NSHISVESLC SSDIDETPTA EVNDTKNSDD SRVISSVLLM
KQNLVAVDIL LNQMRDRNIK LDSFVVSAII ETNCDRCRTE GASLAFDYSL EMGIHLKKSA
YLALIGNFLR SNELPKVIEV VKEMVKAQHS LGCYQGAMLI HRLGFGRRPR LAADVFDLLP
DDQKGVAAYT ALMDVYISAG SPEKAMKILR EMREREIMPS LGTYDVLLSG LEKTSDFQKE
VALLRKEKKS LVASARFREN VHVEDKICDL LFATNLL
