PP140_ARATH
ID PP140_ARATH Reviewed; 584 AA.
AC Q9ZVF4;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-1999, sequence version 1.
DT 25-MAY-2022, entry version 112.
DE RecName: Full=Pentatricopeptide repeat-containing protein At2g01510, mitochondrial;
DE Flags: Precursor;
GN Name=PCMP-H37; OrderedLocusNames=At2g01510; ORFNames=F2I9.13;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=10809006; DOI=10.1023/a:1006352315928;
RA Aubourg S., Boudet N., Kreis M., Lecharny A.;
RT "In Arabidopsis thaliana, 1% of the genome codes for a novel protein family
RT unique to plants.";
RL Plant Mol. Biol. 42:603-613(2000).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC005560; AAC67327.1; -; Genomic_DNA.
DR EMBL; CP002685; AEC05463.1; -; Genomic_DNA.
DR EMBL; CP002685; ANM62267.1; -; Genomic_DNA.
DR PIR; F84425; F84425.
DR RefSeq; NP_001324437.1; NM_001335067.1.
DR RefSeq; NP_178260.1; NM_126212.2.
DR AlphaFoldDB; Q9ZVF4; -.
DR SMR; Q9ZVF4; -.
DR STRING; 3702.AT2G01510.1; -.
DR PaxDb; Q9ZVF4; -.
DR PRIDE; Q9ZVF4; -.
DR ProteomicsDB; 249070; -.
DR EnsemblPlants; AT2G01510.1; AT2G01510.1; AT2G01510.
DR EnsemblPlants; AT2G01510.2; AT2G01510.2; AT2G01510.
DR GeneID; 814680; -.
DR Gramene; AT2G01510.1; AT2G01510.1; AT2G01510.
DR Gramene; AT2G01510.2; AT2G01510.2; AT2G01510.
DR KEGG; ath:AT2G01510; -.
DR Araport; AT2G01510; -.
DR TAIR; locus:2049562; AT2G01510.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_15_10_1; -.
DR InParanoid; Q9ZVF4; -.
DR OMA; FDEMHKP; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9ZVF4; -.
DR PRO; PR:Q9ZVF4; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; Q9ZVF4; baseline and differential.
DR Genevisible; Q9ZVF4; AT.
DR GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR Gene3D; 1.25.40.10; -; 3.
DR InterPro; IPR032867; DYW_dom.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF14432; DYW_deaminase; 1.
DR Pfam; PF01535; PPR; 4.
DR Pfam; PF13041; PPR_2; 1.
DR TIGRFAMs; TIGR00756; PPR; 2.
DR PROSITE; PS51375; PPR; 9.
PE 3: Inferred from homology;
KW Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..20
FT /note="Mitochondrion"
FT /evidence="ECO:0000255"
FT CHAIN 21..584
FT /note="Pentatricopeptide repeat-containing protein
FT At2g01510, mitochondrial"
FT /id="PRO_0000356000"
FT REPEAT 73..107
FT /note="PPR 1"
FT REPEAT 108..142
FT /note="PPR 2"
FT REPEAT 143..173
FT /note="PPR 3"
FT REPEAT 174..208
FT /note="PPR 4"
FT REPEAT 209..243
FT /note="PPR 5"
FT REPEAT 244..274
FT /note="PPR 6"
FT REPEAT 275..309
FT /note="PPR 7"
FT REPEAT 310..344
FT /note="PPR 8"
FT REPEAT 348..378
FT /note="PPR 9"
FT REGION 383..458
FT /note="Type E motif"
FT REGION 459..489
FT /note="Type E(+) motif"
FT REGION 490..584
FT /note="Type DYW motif"
SQ SEQUENCE 584 AA; 66072 MW; 2E9F6627D887EAA4 CRC64;
MLAKQTPLTK QMLSELLRAS SSKPKQLKKI HAIVLRTGFS EKNSLLTQLL ENLVVIGDMC
YARQVFDEMH KPRIFLWNTL FKGYVRNQLP FESLLLYKKM RDLGVRPDEF TYPFVVKAIS
QLGDFSCGFA LHAHVVKYGF GCLGIVATEL VMMYMKFGEL SSAEFLFESM QVKDLVAWNA
FLAVCVQTGN SAIALEYFNK MCADAVQFDS FTVVSMLSAC GQLGSLEIGE EIYDRARKEE
IDCNIIVENA RLDMHLKCGN TEAARVLFEE MKQRNVVSWS TMIVGYAMNG DSREALTLFT
TMQNEGLRPN YVTFLGVLSA CSHAGLVNEG KRYFSLMVQS NDKNLEPRKE HYACMVDLLG
RSGLLEEAYE FIKKMPVEPD TGIWGALLGA CAVHRDMILG QKVADVLVET APDIGSYHVL
LSNIYAAAGK WDCVDKVRSK MRKLGTKKVA AYSSVEFEGK IHFFNRGDKS HPQSKAIYEK
LDEILKKIRK MGYVPDTCSV FHDVEMEEKE CSLSHHSEKL AIAFGLIKGR PGHPIRVMKN
LRTCDDCHAF SKFVSSLTST EIIMRDKNRF HHFRNGVCSC KEFW
