PP142_ARATH
ID PP142_ARATH Reviewed; 486 AA.
AC Q5XET4; Q9SIS8;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 23-NOV-2004, sequence version 1.
DT 03-AUG-2022, entry version 91.
DE RecName: Full=Pentatricopeptide repeat-containing protein At2g01860;
DE AltName: Full=Protein EMBRYO DEFECTIVE 975;
GN Name=EMB975; OrderedLocusNames=At2g01860; ORFNames=T23K3.5;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Shinn P., Chen H., Cheuk R.F., Kim C.J., Ecker J.R.;
RT "Arabidopsis ORF clones.";
RL Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAD21784.1; Type=Erroneous initiation; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC007069; AAD21784.1; ALT_INIT; Genomic_DNA.
DR EMBL; CP002685; AEC05509.1; -; Genomic_DNA.
DR EMBL; BT015882; AAU95418.1; -; mRNA.
DR EMBL; BT020200; AAV59266.1; -; mRNA.
DR EMBL; AK229094; BAF00974.1; -; mRNA.
DR PIR; A84430; A84430.
DR RefSeq; NP_178295.2; NM_126247.3.
DR AlphaFoldDB; Q5XET4; -.
DR SMR; Q5XET4; -.
DR BioGRID; 120; 1.
DR STRING; 3702.AT2G01860.1; -.
DR PaxDb; Q5XET4; -.
DR PRIDE; Q5XET4; -.
DR ProteomicsDB; 250491; -.
DR DNASU; 814717; -.
DR EnsemblPlants; AT2G01860.1; AT2G01860.1; AT2G01860.
DR GeneID; 814717; -.
DR Gramene; AT2G01860.1; AT2G01860.1; AT2G01860.
DR KEGG; ath:AT2G01860; -.
DR Araport; AT2G01860; -.
DR TAIR; locus:2059733; AT2G01860.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_032605_0_0_1; -.
DR InParanoid; Q5XET4; -.
DR OMA; EMGVEHS; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q5XET4; -.
DR PRO; PR:Q5XET4; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; Q5XET4; baseline and differential.
DR Genevisible; Q5XET4; AT.
DR GO; GO:0005739; C:mitochondrion; IBA:GO_Central.
DR Gene3D; 1.25.40.10; -; 2.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 1.
DR Pfam; PF13812; PPR_3; 1.
DR PROSITE; PS51375; PPR; 5.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..486
FT /note="Pentatricopeptide repeat-containing protein
FT At2g01860"
FT /id="PRO_0000356002"
FT REPEAT 290..321
FT /note="PPR 1"
FT REPEAT 327..361
FT /note="PPR 2"
FT REPEAT 362..396
FT /note="PPR 3"
FT REPEAT 397..431
FT /note="PPR 4"
FT REPEAT 432..466
FT /note="PPR 5"
FT REGION 111..137
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 116..132
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 486 AA; 55650 MW; 38885D772E47B1BC CRC64;
MILHCPVSLS LSFHLNLRTS RIGNIGVTRV NASQRNHSKK LTKNLRNPRR TKLPPDFGVN
LFLRKPKIEP LVIDDDDEQV QESVNDDDDA VVWEPEEIEA ISSLFQKRIP QKPDKPSRVR
PLPLPQPHKL RPLGLPTPKK NIIRSPALSS VSKQVYKDPS FLIGLAREIK SLPSSDADVS
LVLNKWVSFL RKGSLSTTIR ELGHMGLPER ALQTYHWAEK HSHLVPDNRI LASTIQVLAK
HHELKLLKFD NSLASKNVIE AMIKGCIEGG WLNLARKLIL ISKSNNRILD SSVYVKMILE
IAKNPDKYHL VVALLEELKK REDLKLSQQD CTSIMKICVK LGEFELVESL FDWFKASNRE
PSVVMYTTMI HSRYSEQKYR EAMSVVWEME ESNCLLDLPA YRVVIKLFVA LDDLGRAMRY
YSKLKEAGFS PTYDIYRDMI SVYTASGRLT KCKEICKEVE DAGLRLDKDT SFRLLQLEKQ
TMSLLH
