PP147_ARATH
ID PP147_ARATH Reviewed; 630 AA.
AC Q9SI53; Q84WG8;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2000, sequence version 1.
DT 25-MAY-2022, entry version 115.
DE RecName: Full=Pentatricopeptide repeat-containing protein At2g03880, mitochondrial;
DE Flags: Precursor;
GN Name=PCMP-H44; OrderedLocusNames=At2g03880; ORFNames=T18C20.8;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP GENE FAMILY.
RX PubMed=10809006; DOI=10.1023/a:1006352315928;
RA Aubourg S., Boudet N., Kreis M., Lecharny A.;
RT "In Arabidopsis thaliana, 1% of the genome codes for a novel protein family
RT unique to plants.";
RL Plant Mol. Biol. 42:603-613(2000).
RN [5]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; AC007196; AAD24821.1; -; Genomic_DNA.
DR EMBL; CP002685; AEC05762.1; -; Genomic_DNA.
DR EMBL; BT003840; AAO41891.1; -; mRNA.
DR PIR; C84453; C84453.
DR RefSeq; NP_178481.1; NM_126433.4.
DR AlphaFoldDB; Q9SI53; -.
DR SMR; Q9SI53; -.
DR STRING; 3702.AT2G03880.1; -.
DR PaxDb; Q9SI53; -.
DR PRIDE; Q9SI53; -.
DR ProteomicsDB; 249414; -.
DR EnsemblPlants; AT2G03880.1; AT2G03880.1; AT2G03880.
DR GeneID; 814914; -.
DR Gramene; AT2G03880.1; AT2G03880.1; AT2G03880.
DR KEGG; ath:AT2G03880; -.
DR Araport; AT2G03880; -.
DR TAIR; locus:2056794; AT2G03880.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_37_8_1; -.
DR InParanoid; Q9SI53; -.
DR OMA; MPNMFTF; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9SI53; -.
DR PRO; PR:Q9SI53; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; Q9SI53; baseline and differential.
DR Genevisible; Q9SI53; AT.
DR GO; GO:0005739; C:mitochondrion; IDA:TAIR.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0009451; P:RNA modification; IMP:TAIR.
DR Gene3D; 1.25.40.10; -; 4.
DR InterPro; IPR032867; DYW_dom.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF14432; DYW_deaminase; 1.
DR Pfam; PF01535; PPR; 3.
DR Pfam; PF12854; PPR_1; 2.
DR Pfam; PF13041; PPR_2; 2.
DR SUPFAM; SSF48452; SSF48452; 1.
DR TIGRFAMs; TIGR00756; PPR; 7.
DR PROSITE; PS51375; PPR; 10.
PE 2: Evidence at transcript level;
KW Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..76
FT /note="Mitochondrion"
FT /evidence="ECO:0000255"
FT CHAIN 77..630
FT /note="Pentatricopeptide repeat-containing protein
FT At2g03880, mitochondrial"
FT /id="PRO_0000356007"
FT REPEAT 60..94
FT /note="PPR 1"
FT REPEAT 95..125
FT /note="PPR 2"
FT REPEAT 126..160
FT /note="PPR 3"
FT REPEAT 161..192
FT /note="PPR 4"
FT REPEAT 193..223
FT /note="PPR 5"
FT REPEAT 224..258
FT /note="PPR 6"
FT REPEAT 259..289
FT /note="PPR 7"
FT REPEAT 292..322
FT /note="PPR 8"
FT REPEAT 323..357
FT /note="PPR 9"
FT REPEAT 358..388
FT /note="PPR 10"
FT REPEAT 394..424
FT /note="PPR 11"
FT REGION 429..504
FT /note="Type E motif"
FT REGION 505..535
FT /note="Type E(+) motif"
FT REGION 536..630
FT /note="Type DYW motif"
FT CONFLICT 612
FT /note="D -> G (in Ref. 3; AAO41891)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 630 AA; 71699 MW; 77AD06B3636C9CEF CRC64;
MKSVMSKIKL FRPVVTLRCS YSSTDQTLLL SEFTRLCYQR DLPRAMKAMD SLQSHGLWAD
SATYSELIKC CISNRAVHEG NLICRHLYFN GHRPMMFLVN VLINMYVKFN LLNDAHQLFD
QMPQRNVISW TTMISAYSKC KIHQKALELL VLMLRDNVRP NVYTYSSVLR SCNGMSDVRM
LHCGIIKEGL ESDVFVRSAL IDVFAKLGEP EDALSVFDEM VTGDAIVWNS IIGGFAQNSR
SDVALELFKR MKRAGFIAEQ ATLTSVLRAC TGLALLELGM QAHVHIVKYD QDLILNNALV
DMYCKCGSLE DALRVFNQMK ERDVITWSTM ISGLAQNGYS QEALKLFERM KSSGTKPNYI
TIVGVLFACS HAGLLEDGWY YFRSMKKLYG IDPVREHYGC MIDLLGKAGK LDDAVKLLNE
MECEPDAVTW RTLLGACRVQ RNMVLAEYAA KKVIALDPED AGTYTLLSNI YANSQKWDSV
EEIRTRMRDR GIKKEPGCSW IEVNKQIHAF IIGDNSHPQI VEVSKKLNQL IHRLTGIGYV
PETNFVLQDL EGEQMEDSLR HHSEKLALAF GLMTLPIEKV IRIRKNLRIC GDCHVFCKLA
SKLEIRSIVI RDPIRYHHFQ DGKCSCGDYW
