PP148_ARATH
ID PP148_ARATH Reviewed; 692 AA.
AC Q9SJ73; A0MEI9;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 31-MAY-2011, sequence version 3.
DT 03-AUG-2022, entry version 121.
DE RecName: Full=Pentatricopeptide repeat-containing protein At2g04860;
GN Name=PCMP-E74; OrderedLocusNames=At2g04860; ORFNames=F28I8.8;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 111-692.
RC STRAIN=cv. Columbia;
RX PubMed=17147637; DOI=10.1111/j.1467-7652.2006.00183.x;
RA Underwood B.A., Vanderhaeghen R., Whitford R., Town C.D., Hilson P.;
RT "Simultaneous high-throughput recombinational cloning of open reading
RT frames in closed and open configurations.";
RL Plant Biotechnol. J. 4:317-324(2006).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-E subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAD22320.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305};
CC Sequence=ABK28484.1; Type=Erroneous termination; Note=Extended C-terminus.; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC006955; AAD22320.1; ALT_INIT; Genomic_DNA.
DR EMBL; CP002685; AEC05877.1; -; Genomic_DNA.
DR EMBL; DQ446469; ABE65802.1; -; mRNA.
DR EMBL; DQ652961; ABK28484.1; ALT_SEQ; mRNA.
DR PIR; D84462; D84462.
DR RefSeq; NP_178563.2; NM_126518.3.
DR AlphaFoldDB; Q9SJ73; -.
DR SMR; Q9SJ73; -.
DR iPTMnet; Q9SJ73; -.
DR PaxDb; Q9SJ73; -.
DR PRIDE; Q9SJ73; -.
DR EnsemblPlants; AT2G04860.1; AT2G04860.1; AT2G04860.
DR GeneID; 815032; -.
DR Gramene; AT2G04860.1; AT2G04860.1; AT2G04860.
DR KEGG; ath:AT2G04860; -.
DR Araport; AT2G04860; -.
DR TAIR; locus:2049249; AT2G04860.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_15_10_1; -.
DR InParanoid; Q9SJ73; -.
DR OMA; YAIVGRW; -.
DR OrthoDB; 1344243at2759; -.
DR PRO; PR:Q9SJ73; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; Q9SJ73; baseline and differential.
DR Genevisible; Q9SJ73; AT.
DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IBA:GO_Central.
DR GO; GO:0005739; C:mitochondrion; IBA:GO_Central.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; -; 6.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR045215; PPR_prot_plant.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR PANTHER; PTHR24015; PTHR24015; 3.
DR Pfam; PF01535; PPR; 3.
DR Pfam; PF13041; PPR_2; 4.
DR TIGRFAMs; TIGR00756; PPR; 4.
DR PROSITE; PS51375; PPR; 16.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..692
FT /note="Pentatricopeptide repeat-containing protein
FT At2g04860"
FT /id="PRO_0000356008"
FT REPEAT 12..46
FT /note="PPR 1"
FT REPEAT 47..83
FT /note="PPR 2"
FT REPEAT 84..114
FT /note="PPR 3"
FT REPEAT 115..149
FT /note="PPR 4"
FT REPEAT 150..184
FT /note="PPR 5"
FT REPEAT 185..215
FT /note="PPR 6"
FT REPEAT 216..250
FT /note="PPR 7"
FT REPEAT 280..314
FT /note="PPR 8"
FT REPEAT 316..345
FT /note="PPR 9"
FT REPEAT 346..380
FT /note="PPR 10"
FT REPEAT 381..411
FT /note="PPR 11"
FT REPEAT 412..447
FT /note="PPR 12"
FT REPEAT 448..482
FT /note="PPR 13"
FT REPEAT 483..513
FT /note="PPR 14"
FT REPEAT 514..548
FT /note="PPR 15"
FT REPEAT 549..584
FT /note="PPR 16"
FT REPEAT 585..615
FT /note="PPR 17"
FT REGION 620..692
FT /note="Type E motif; degenerate"
SQ SEQUENCE 692 AA; 76652 MW; 3D9824E694C5F1F0 CRC64;
MRITKPITLY RDLSYFHSLL KSCIHGEISS SPITIFRDLL RSSLTPNHFT MSIFLQATTT
SFNSFKLQVE QVQTHLTKSG LDRFVYVKTS LLNLYLKKGC VTSAQMLFDE MPERDTVVWN
ALICGYSRNG YECDAWKLFI VMLQQGFSPS ATTLVNLLPF CGQCGFVSQG RSVHGVAAKS
GLELDSQVKN ALISFYSKCA ELGSAEVLFR EMKDKSTVSW NTMIGAYSQS GLQEEAITVF
KNMFEKNVEI SPVTIINLLS AHVSHEPLHC LVVKCGMVND ISVVTSLVCA YSRCGCLVSA
ERLYASAKQD SIVGLTSIVS CYAEKGDMDI AVVYFSKTRQ LCMKIDAVAL VGILHGCKKS
SHIDIGMSLH GYAIKSGLCT KTLVVNGLIT MYSKFDDVET VLFLFEQLQE TPLISWNSVI
SGCVQSGRAS TAFEVFHQMM LTGGLLPDAI TIASLLAGCS QLCCLNLGKE LHGYTLRNNF
ENENFVCTAL IDMYAKCGNE VQAESVFKSI KAPCTATWNS MISGYSLSGL QHRALSCYLE
MREKGLKPDE ITFLGVLSAC NHGGFVDEGK ICFRAMIKEF GISPTLQHYA LMVGLLGRAC
LFTEALYLIW KMDIKPDSAV WGALLSACII HRELEVGEYV ARKMFMLDYK NGGLYVLMSN
LYATEAMWDD VVRVRNMMKD NGYDGYLGVS QI
