PP156_ARATH
ID PP156_ARATH Reviewed; 743 AA.
AC Q9ZVX5;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-1999, sequence version 1.
DT 03-AUG-2022, entry version 117.
DE RecName: Full=Pentatricopeptide repeat-containing protein At2g16880;
GN OrderedLocusNames=At2g16880; ORFNames=F12A24.6;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC005167; AAC64219.1; -; Genomic_DNA.
DR EMBL; CP002685; AEC06546.1; -; Genomic_DNA.
DR EMBL; AY072079; AAL59902.1; -; mRNA.
DR EMBL; AY096663; AAM20297.1; -; mRNA.
DR PIR; D84545; D84545.
DR RefSeq; NP_179280.1; NM_127241.5.
DR AlphaFoldDB; Q9ZVX5; -.
DR SMR; Q9ZVX5; -.
DR BioGRID; 1546; 1.
DR IntAct; Q9ZVX5; 1.
DR STRING; 3702.AT2G16880.1; -.
DR PaxDb; Q9ZVX5; -.
DR PRIDE; Q9ZVX5; -.
DR ProteomicsDB; 249421; -.
DR EnsemblPlants; AT2G16880.1; AT2G16880.1; AT2G16880.
DR GeneID; 816189; -.
DR Gramene; AT2G16880.1; AT2G16880.1; AT2G16880.
DR KEGG; ath:AT2G16880; -.
DR Araport; AT2G16880; -.
DR TAIR; locus:2039415; AT2G16880.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_12_1; -.
DR InParanoid; Q9ZVX5; -.
DR OMA; LNAHCRK; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9ZVX5; -.
DR PRO; PR:Q9ZVX5; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; Q9ZVX5; baseline and differential.
DR Genevisible; Q9ZVX5; AT.
DR GO; GO:0003729; F:mRNA binding; IDA:TAIR.
DR Gene3D; 1.25.40.10; -; 5.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF12854; PPR_1; 1.
DR Pfam; PF13041; PPR_2; 6.
DR Pfam; PF13812; PPR_3; 1.
DR SUPFAM; SSF48452; SSF48452; 1.
DR TIGRFAMs; TIGR00756; PPR; 13.
DR PROSITE; PS51375; PPR; 17.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..743
FT /note="Pentatricopeptide repeat-containing protein
FT At2g16880"
FT /id="PRO_0000356016"
FT REPEAT 130..164
FT /note="PPR 1"
FT REPEAT 165..202
FT /note="PPR 2"
FT REPEAT 203..233
FT /note="PPR 3"
FT REPEAT 239..273
FT /note="PPR 4"
FT REPEAT 274..308
FT /note="PPR 5"
FT REPEAT 309..343
FT /note="PPR 6"
FT REPEAT 344..378
FT /note="PPR 7"
FT REPEAT 379..414
FT /note="PPR 8"
FT REPEAT 415..449
FT /note="PPR 9"
FT REPEAT 450..484
FT /note="PPR 10"
FT REPEAT 485..519
FT /note="PPR 11"
FT REPEAT 520..554
FT /note="PPR 12"
FT REPEAT 555..589
FT /note="PPR 13"
FT REPEAT 590..620
FT /note="PPR 14"
FT REPEAT 624..658
FT /note="PPR 15"
FT REPEAT 659..689
FT /note="PPR 16"
SQ SEQUENCE 743 AA; 83768 MW; 651D50AF482F7C09 CRC64;
MATLKPPESQ LLKTLTSILT SEKTHFLETL NPYIPQITQP LLTSLLSSPS LAKKPETLVS
FFQWAQTSIP EAFPSDSPLP LISVVRSLLS HHKFADAKSL LVSYIRTSDA SLSLCNSLLH
PNLHLSPPPS KALFDIALSA YLHEGKPHVA LQIFQKMIRL KLKPNLLTCN TLLIGLVRYP
SSFSISSARE VFDDMVKIGV SLNVQTFNVL VNGYCLEGKL EDALGMLERM VSEFKVNPDN
VTYNTILKAM SKKGRLSDLK ELLLDMKKNG LVPNRVTYNN LVYGYCKLGS LKEAFQIVEL
MKQTNVLPDL CTYNILINGL CNAGSMREGL ELMDAMKSLK LQPDVVTYNT LIDGCFELGL
SLEARKLMEQ MENDGVKANQ VTHNISLKWL CKEEKREAVT RKVKELVDMH GFSPDIVTYH
TLIKAYLKVG DLSGALEMMR EMGQKGIKMN TITLNTILDA LCKERKLDEA HNLLNSAHKR
GFIVDEVTYG TLIMGFFREE KVEKALEMWD EMKKVKITPT VSTFNSLIGG LCHHGKTELA
MEKFDELAES GLLPDDSTFN SIILGYCKEG RVEKAFEFYN ESIKHSFKPD NYTCNILLNG
LCKEGMTEKA LNFFNTLIEE REVDTVTYNT MISAFCKDKK LKEAYDLLSE MEEKGLEPDR
FTYNSFISLL MEDGKLSETD ELLKKFSGKF GSMKRDLQVE TEKNPATSES KEELNTEAIA
YSDVIDELCS RGRLKEHSRS YTS
