PP157_ARATH
ID PP157_ARATH Reviewed; 505 AA.
AC Q8GWA9; Q0WPA0; Q7XJL8; Q94K83;
DT 20-FEB-2007, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2003, sequence version 1.
DT 03-AUG-2022, entry version 100.
DE RecName: Full=Pentatricopeptide repeat-containing protein At2g17033;
GN OrderedLocusNames=At2g17033; ORFNames=F6P23.19;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
RC STRAIN=cv. Columbia;
RX PubMed=11910074; DOI=10.1126/science.1071006;
RA Seki M., Narusaka M., Kamiya A., Ishida J., Satou M., Sakurai T.,
RA Nakajima M., Enju A., Akiyama K., Oono Y., Muramatsu M., Hayashizaki Y.,
RA Kawai J., Carninci P., Itoh M., Ishii Y., Arakawa T., Shibata K.,
RA Shinagawa A., Shinozaki K.;
RT "Functional annotation of a full-length Arabidopsis cDNA collection.";
RL Science 296:141-145(2002).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 3).
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
RN [6]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=3;
CC Name=1;
CC IsoId=Q8GWA9-1; Sequence=Displayed;
CC Name=2;
CC IsoId=Q8GWA9-2; Sequence=VSP_022943;
CC Name=3;
CC IsoId=Q8GWA9-3; Sequence=VSP_027475;
CC -!- MISCELLANEOUS: [Isoform 2]: May be due to a competing donor splice
CC site. {ECO:0000305}.
CC -!- MISCELLANEOUS: [Isoform 3]: May be due to a competing donor splice
CC site. {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; CP002685; AEC06575.1; -; Genomic_DNA.
DR EMBL; CP002685; AEC06576.1; -; Genomic_DNA.
DR EMBL; CP002685; ANM61874.1; -; Genomic_DNA.
DR EMBL; AK118968; BAC43545.1; -; mRNA.
DR EMBL; AF370201; AAK44016.1; -; mRNA.
DR EMBL; AY113883; AAM44931.1; -; mRNA.
DR EMBL; AK229179; BAF01049.1; -; mRNA.
DR PIR; C84547; C84547.
DR RefSeq; NP_001324066.1; NM_001335531.1. [Q8GWA9-2]
DR RefSeq; NP_565402.1; NM_127257.3. [Q8GWA9-3]
DR RefSeq; NP_849962.1; NM_179631.2. [Q8GWA9-1]
DR AlphaFoldDB; Q8GWA9; -.
DR SMR; Q8GWA9; -.
DR STRING; 3702.AT2G17033.2; -.
DR PaxDb; Q8GWA9; -.
DR PRIDE; Q8GWA9; -.
DR ProteomicsDB; 249422; -. [Q8GWA9-1]
DR EnsemblPlants; AT2G17033.1; AT2G17033.1; AT2G17033. [Q8GWA9-3]
DR EnsemblPlants; AT2G17033.2; AT2G17033.2; AT2G17033. [Q8GWA9-1]
DR EnsemblPlants; AT2G17033.3; AT2G17033.3; AT2G17033. [Q8GWA9-2]
DR GeneID; 816207; -.
DR Gramene; AT2G17033.1; AT2G17033.1; AT2G17033. [Q8GWA9-3]
DR Gramene; AT2G17033.2; AT2G17033.2; AT2G17033. [Q8GWA9-1]
DR Gramene; AT2G17033.3; AT2G17033.3; AT2G17033. [Q8GWA9-2]
DR KEGG; ath:AT2G17033; -.
DR Araport; AT2G17033; -.
DR TAIR; locus:505006249; AT2G17033.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_564267_0_0_1; -.
DR InParanoid; Q8GWA9; -.
DR OMA; WSESEVK; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q8GWA9; -.
DR PRO; PR:Q8GWA9; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; Q8GWA9; baseline and differential.
DR Genevisible; Q8GWA9; AT.
DR Gene3D; 1.25.40.10; -; 1.
DR Gene3D; 3.30.1370.110; -; 1.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR002625; Smr_dom.
DR InterPro; IPR036063; Smr_dom_sf.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 2.
DR SMART; SM00463; SMR; 1.
DR SUPFAM; SSF160443; SSF160443; 1.
DR TIGRFAMs; TIGR00756; PPR; 2.
DR PROSITE; PS51375; PPR; 2.
DR PROSITE; PS50828; SMR; 1.
PE 2: Evidence at transcript level;
KW Alternative splicing; Reference proteome; Repeat.
FT CHAIN 1..505
FT /note="Pentatricopeptide repeat-containing protein
FT At2g17033"
FT /id="PRO_0000274928"
FT REPEAT 243..277
FT /note="PPR 1"
FT REPEAT 278..312
FT /note="PPR 2"
FT REPEAT 313..347
FT /note="PPR 3"
FT DOMAIN 413..503
FT /note="Smr"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00321"
FT VAR_SEQ 2..11
FT /note="AALIQTIHGG -> VVNPTC (in isoform 2)"
FT /evidence="ECO:0000303|Ref.5"
FT /id="VSP_022943"
FT VAR_SEQ 11
FT /note="Missing (in isoform 3)"
FT /evidence="ECO:0000303|PubMed:14593172"
FT /id="VSP_027475"
SQ SEQUENCE 505 AA; 56527 MW; FF582AC73097EB57 CRC64;
MAALIQTIHG GVVVTRTLTL VYPSTFTSRH KALNQMTSSS NSGLRRFLFT PPQRLSQGIC
YWGAELSNNV SWTYKTKMVV RSKAGAVPLM KHGDRFLSSL SSPALAGDPS AINRHIKKFV
AASPKSVALN VLSHLLSDQT SHPHLSFFAL SLYSEITEAS WFDWNPKLIA ELIALLNKQE
RFDESETLLS TAVSRLKSNE RDFTLFLCNL VESNSKQGSI QGFSEASFRL REIIQRSSSV
YVKTQAYKSM VSGLCNMDQP HDAERVIEEM RMEKIKPGLF EYKSVLYGYG RLGLFDDMNR
VVHRMGTEGH KIDTVCSNMV LSSYGAHDAL PQMGSWLQKL KGFNVPFSIR TYNSVLNSCP
TIISMLKDLD SCPVSLSELR TFLNEDEALL VHELTQSSVL DEAIEWNAVE GKLDLHGMHL
SSSYLILLQW MDETRLRFSE EKCVIPAEIV VVSGSGKHSN VRGESPVKAL VKKIMVRTGS
PMRIDRKNVG SFIAKGKTVK EWLCK
