PP160_ARATH
ID PP160_ARATH Reviewed; 626 AA.
AC Q84VG6;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 16-DEC-2008, sequence version 2.
DT 03-AUG-2022, entry version 100.
DE RecName: Full=Pentatricopeptide repeat-containing protein At2g17525, mitochondrial;
DE Flags: Precursor;
GN OrderedLocusNames=At2g17525; ORFNames=MJB20.17;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=16244158; DOI=10.1104/pp.105.063479;
RA Xiao Y.-L., Smith S.R., Ishmael N., Redman J.C., Kumar N., Monaghan E.L.,
RA Ayele M., Haas B.J., Wu H.C., Town C.D.;
RT "Analysis of the cDNAs of hypothetical genes on Arabidopsis chromosome 2
RT reveals numerous transcript variants.";
RL Plant Physiol. 139:1323-1337(2005).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAO72718.1; Type=Erroneous termination; Note=Extended C-terminus.; Evidence={ECO:0000305};
CC Sequence=AAO72718.1; Type=Frameshift; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC007584; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; CP002685; AEC06641.1; -; Genomic_DNA.
DR EMBL; AY208187; AAO72718.1; ALT_SEQ; mRNA.
DR RefSeq; NP_671862.1; NM_147326.2.
DR AlphaFoldDB; Q84VG6; -.
DR SMR; Q84VG6; -.
DR PaxDb; Q84VG6; -.
DR PRIDE; Q84VG6; -.
DR EnsemblPlants; AT2G17525.1; AT2G17525.1; AT2G17525.
DR GeneID; 816259; -.
DR Gramene; AT2G17525.1; AT2G17525.1; AT2G17525.
DR KEGG; ath:AT2G17525; -.
DR Araport; AT2G17525; -.
DR TAIR; locus:504955997; AT2G17525.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_12_1; -.
DR InParanoid; Q84VG6; -.
DR OMA; YRKKMMG; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q84VG6; -.
DR PRO; PR:Q84VG6; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; Q84VG6; baseline and differential.
DR GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR Gene3D; 1.25.40.10; -; 5.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 5.
DR Pfam; PF13041; PPR_2; 3.
DR Pfam; PF13812; PPR_3; 1.
DR TIGRFAMs; TIGR00756; PPR; 10.
DR PROSITE; PS51375; PPR; 15.
PE 2: Evidence at transcript level;
KW Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..66
FT /note="Mitochondrion"
FT /evidence="ECO:0000255"
FT CHAIN 67..626
FT /note="Pentatricopeptide repeat-containing protein
FT At2g17525, mitochondrial"
FT /id="PRO_0000356019"
FT REPEAT 75..109
FT /note="PPR 1"
FT REPEAT 111..145
FT /note="PPR 2"
FT REPEAT 146..180
FT /note="PPR 3"
FT REPEAT 181..215
FT /note="PPR 4"
FT REPEAT 216..250
FT /note="PPR 5"
FT REPEAT 251..281
FT /note="PPR 6"
FT REPEAT 282..316
FT /note="PPR 7"
FT REPEAT 317..351
FT /note="PPR 8"
FT REPEAT 352..386
FT /note="PPR 9"
FT REPEAT 387..421
FT /note="PPR 10"
FT REPEAT 424..454
FT /note="PPR 11"
FT REPEAT 457..491
FT /note="PPR 12"
FT REPEAT 492..526
FT /note="PPR 13"
FT REPEAT 527..561
FT /note="PPR 14"
FT REPEAT 562..596
FT /note="PPR 15"
FT CONFLICT 76
FT /note="R -> C (in Ref. 3; AAO72718)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 626 AA; 70343 MW; 78599E18DA16D489 CRC64;
MLRILKLSTS SRSVPLTRLW LLQLPCFCSS SSSSSSLLSV PSDDHIVRLI LDQKSASGAL
ETFRWASTFP GFIHSRSTYR ALFHKLCVFR RFDTVYQLLD EMPDSIGLPP DDAIFVTIIR
GFGRARLIKR VISVVDLVSK FGIKPSLKVF NSILDVLVKE DIDIAREFFT RKMMASGIHG
DVYTYGILMK GLSLTNRIGD GFKLLQIMKT SGVAPNAVVY NTLLHALCKN GKVGRARSLM
SEMKEPNDVT FNILISAYCN EQKLIQSMVL LEKCFSLGFV PDVVTVTKVM EVLCNEGRVS
EALEVLERVE SKGGKVDVVA CNTLVKGYCA LGKMRVAQRF FIEMERKGYL PNVETYNLLI
AGYCDVGMLD SALDTFNDMK TDAIRWNFAT FNTLIRGLSI GGRTDDGLKI LEMMQDSDTV
HGARIDPYNC VIYGFYKENR WEDALEFLLK MEKLFPRAVD RSFKLISLCE KGGMDDLKTA
YDQMIGEGGV PSIIVSHCLI HRYSQHGKIE ESLELINDMV TRGYLPRSST FNAVIIGFCK
QDKVMNGIKF VEDMAERGCV PDTESYNPLL EELCVKGDIQ KAWLLFSRMV EKSIVPDPSM
WSSLMFCLSQ KTAIHVNSSL QDIIQS
