PP161_ARATH
ID PP161_ARATH Reviewed; 463 AA.
AC Q84J71; Q8LED8;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-JUN-2003, sequence version 1.
DT 03-AUG-2022, entry version 99.
DE RecName: Full=Pentatricopeptide repeat-containing protein At2g17670;
GN OrderedLocusNames=At2g17670; ORFNames=T17A5.11;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- INTERACTION:
CC Q84J71; O23160: MYB73; NbExp=3; IntAct=EBI-4426341, EBI-25506855;
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=1;
CC Comment=A number of isoforms are produced. According to EST
CC sequences.;
CC Name=1;
CC IsoId=Q84J71-1; Sequence=Displayed;
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; CP002685; AEC06664.1; -; Genomic_DNA.
DR EMBL; BT004095; AAO42121.1; -; mRNA.
DR EMBL; BT005703; AAO64123.1; -; mRNA.
DR EMBL; AY085478; AAM62704.1; -; mRNA.
DR PIR; A84555; A84555.
DR PIR; T08865; T08865.
DR RefSeq; NP_565422.1; NM_127321.3. [Q84J71-1]
DR AlphaFoldDB; Q84J71; -.
DR SMR; Q84J71; -.
DR BioGRID; 1631; 9.
DR IntAct; Q84J71; 9.
DR STRING; 3702.AT2G17670.1; -.
DR PaxDb; Q84J71; -.
DR PRIDE; Q84J71; -.
DR ProteomicsDB; 249137; -. [Q84J71-1]
DR EnsemblPlants; AT2G17670.1; AT2G17670.1; AT2G17670. [Q84J71-1]
DR GeneID; 816274; -.
DR Gramene; AT2G17670.1; AT2G17670.1; AT2G17670. [Q84J71-1]
DR KEGG; ath:AT2G17670; -.
DR Araport; AT2G17670; -.
DR TAIR; locus:2827891; AT2G17670.
DR eggNOG; KOG4197; Eukaryota.
DR InParanoid; Q84J71; -.
DR OMA; FLVKCLC; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q84J71; -.
DR PRO; PR:Q84J71; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; Q84J71; baseline and differential.
DR Genevisible; Q84J71; AT.
DR Gene3D; 1.25.40.10; -; 3.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR033443; PPR_long.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 1.
DR Pfam; PF13041; PPR_2; 1.
DR Pfam; PF17177; PPR_long; 1.
DR TIGRFAMs; TIGR00756; PPR; 7.
DR PROSITE; PS51375; PPR; 10.
PE 1: Evidence at protein level;
KW Alternative splicing; Reference proteome; Repeat.
FT CHAIN 1..463
FT /note="Pentatricopeptide repeat-containing protein
FT At2g17670"
FT /id="PRO_0000356020"
FT REPEAT 121..157
FT /note="PPR 1"
FT REPEAT 158..192
FT /note="PPR 2"
FT REPEAT 193..223
FT /note="PPR 3"
FT REPEAT 229..263
FT /note="PPR 4"
FT REPEAT 264..298
FT /note="PPR 5"
FT REPEAT 299..333
FT /note="PPR 6"
FT REPEAT 334..368
FT /note="PPR 7"
FT REPEAT 369..403
FT /note="PPR 8"
FT REPEAT 404..438
FT /note="PPR 9"
FT REGION 1..63
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 40..63
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 11
FT /note="M -> I (in Ref. 4; AAM62704)"
FT /evidence="ECO:0000305"
FT CONFLICT 46
FT /note="Q -> H (in Ref. 4; AAM62704)"
FT /evidence="ECO:0000305"
FT CONFLICT 96
FT /note="G -> A (in Ref. 4; AAM62704)"
FT /evidence="ECO:0000305"
FT CONFLICT 102
FT /note="N -> D (in Ref. 4; AAM62704)"
FT /evidence="ECO:0000305"
FT CONFLICT 107
FT /note="L -> F (in Ref. 4; AAM62704)"
FT /evidence="ECO:0000305"
FT CONFLICT 112
FT /note="L -> M (in Ref. 4; AAM62704)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 463 AA; 51408 MW; E6EEB31E87BD45E3 CRC64;
MGKVPSSFRS MPANLLVRKT TPSPPAPPRD FRNRTAVGGD SAKLPQNTQA PREPSLRNPF
KSPNLSDAKS LFNSIAATSR IPLDLKFHNS VLQSYGSIAV VNDTVKLFQH ILKSQPNFRP
GRSTFLILLS HACRAPDSSI SNVHRVLNLM VNNGLEPDQV TTDIAVRSLC ETGRVDEAKD
LMKELTEKHS PPDTYTYNFL LKHLCKCKDL HVVYEFVDEM RDDFDVKPDL VSFTILIDNV
CNSKNLREAM YLVSKLGNAG FKPDCFLYNT IMKGFCTLSK GSEAVGVYKK MKEEGVEPDQ
ITYNTLIFGL SKAGRVEEAR MYLKTMVDAG YEPDTATYTS LMNGMCRKGE SLGALSLLEE
MEARGCAPND CTYNTLLHGL CKARLMDKGM ELYEMMKSSG VKLESNGYAT LVRSLVKSGK
VAEAYEVFDY AVDSKSLSDA SAYSTLETTL KWLKKAKEQG LVP
