PP162_ARATH
ID PP162_ARATH Reviewed; 418 AA.
AC Q9ZU67;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-1999, sequence version 1.
DT 03-AUG-2022, entry version 114.
DE RecName: Full=Pentatricopeptide repeat-containing protein At2g18520, mitochondrial;
DE Flags: Precursor;
GN OrderedLocusNames=At2g18520; ORFNames=F24H14.13;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
RN [5]
RP IDENTIFICATION BY MASS SPECTROMETRY, AND CLEAVAGE OF TRANSIT PEPTIDE AFTER
RP PHE-14.
RX PubMed=25732537; DOI=10.1093/jxb/erv064;
RA Carrie C., Venne A.S., Zahedi R.P., Soll J.;
RT "Identification of cleavage sites and substrate proteins for two
RT mitochondrial intermediate peptidases in Arabidopsis thaliana.";
RL J. Exp. Bot. 66:2691-2708(2015).
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305|PubMed:25732537}.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC006135; AAD12215.1; -; Genomic_DNA.
DR EMBL; CP002685; AEC06777.1; -; Genomic_DNA.
DR EMBL; AY088617; AAM66940.1; -; mRNA.
DR PIR; C84565; C84565.
DR RefSeq; NP_565439.1; NM_127408.2.
DR AlphaFoldDB; Q9ZU67; -.
DR SMR; Q9ZU67; -.
DR STRING; 3702.AT2G18520.1; -.
DR PaxDb; Q9ZU67; -.
DR PRIDE; Q9ZU67; -.
DR ProteomicsDB; 249138; -.
DR EnsemblPlants; AT2G18520.1; AT2G18520.1; AT2G18520.
DR GeneID; 816367; -.
DR Gramene; AT2G18520.1; AT2G18520.1; AT2G18520.
DR KEGG; ath:AT2G18520; -.
DR Araport; AT2G18520; -.
DR TAIR; locus:2046288; AT2G18520.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_10_3_1; -.
DR InParanoid; Q9ZU67; -.
DR OMA; AMELTVQ; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9ZU67; -.
DR PRO; PR:Q9ZU67; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; Q9ZU67; baseline and differential.
DR Genevisible; Q9ZU67; AT.
DR GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR Gene3D; 1.25.40.10; -; 2.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 2.
DR Pfam; PF13041; PPR_2; 2.
DR TIGRFAMs; TIGR00756; PPR; 4.
DR PROSITE; PS51375; PPR; 8.
PE 1: Evidence at protein level;
KW Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..14
FT /note="Mitochondrion"
FT /evidence="ECO:0000269|PubMed:25732537"
FT CHAIN 15..418
FT /note="Pentatricopeptide repeat-containing protein
FT At2g18520, mitochondrial"
FT /id="PRO_0000356021"
FT REPEAT 101..135
FT /note="PPR 1"
FT REPEAT 136..166
FT /note="PPR 2"
FT REPEAT 173..207
FT /note="PPR 3"
FT REPEAT 208..242
FT /note="PPR 4"
FT REPEAT 243..276
FT /note="PPR 5"
FT REPEAT 277..311
FT /note="PPR 6"
FT REPEAT 312..342
FT /note="PPR 7"
FT REPEAT 343..373
FT /note="PPR 8"
SQ SEQUENCE 418 AA; 47328 MW; 4C743BEC3E59D02A CRC64;
MTSSRLYLRF LRRFSTATGI DSQTTAYPGA ITMSKAKSKL RKVQDPDKAL AIYKSVSNNS
TSPLSSRYAM ELTVQRLAKS QRFSDIEALI ESHKNNPKIK TETFLSTLIR SYGRASMFDH
AMKMFEEMDK LGTPRTVVSF NALLAACLHS DLFERVPQLF DEFPQRYNNI TPDKISYGML
IKSYCDSGKP EKAMEIMRDM EVKGVEVTII AFTTILGSLY KNGLVDEAES LWIEMVNKGC
DLDNTVYNVR LMNAAKESPE RVKELMEEMS SVGLKPDTVS YNYLMTAYCV KGMMSEAKKV
YEGLEQPNAA TFRTLIFHLC INGLYDQGLT VFKKSAIVHK IPDFKTCKHL TEGLVKNNRM
EDARGVARIV KKKFPPRLVT EWKKLEEKLG LYSKGNAAAV SSSSQTREVL DQEREDDV
