PP163_ARATH
ID PP163_ARATH Reviewed; 822 AA.
AC O64624;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-AUG-1998, sequence version 1.
DT 03-AUG-2022, entry version 122.
DE RecName: Full=Pentatricopeptide repeat-containing protein At2g18940, chloroplastic;
DE Flags: Precursor;
GN OrderedLocusNames=At2g18940; ORFNames=F19F24.14;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Cheuk R.F., Chen H., Kim C.J., Shinn P., Carninci P., Hayashizaki Y.,
RA Ishida J., Kamiya A., Kawai J., Narusaka M., Sakurai T., Satou M., Seki M.,
RA Shinozaki K., Ecker J.R.;
RT "Arabidopsis cDNA clones.";
RL Submitted (NOV-2003) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC003673; AAC09028.1; -; Genomic_DNA.
DR EMBL; CP002685; AEC06830.1; -; Genomic_DNA.
DR EMBL; AY056798; AAL10489.1; -; mRNA.
DR EMBL; BT010749; AAR23719.1; -; mRNA.
DR PIR; T01622; T01622.
DR RefSeq; NP_179484.1; NM_127451.2.
DR AlphaFoldDB; O64624; -.
DR SMR; O64624; -.
DR STRING; 3702.AT2G18940.1; -.
DR PaxDb; O64624; -.
DR PRIDE; O64624; -.
DR ProteomicsDB; 249426; -.
DR EnsemblPlants; AT2G18940.1; AT2G18940.1; AT2G18940.
DR GeneID; 816411; -.
DR Gramene; AT2G18940.1; AT2G18940.1; AT2G18940.
DR KEGG; ath:AT2G18940; -.
DR Araport; AT2G18940; -.
DR TAIR; locus:2044430; AT2G18940.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_8_1; -.
DR InParanoid; O64624; -.
DR OMA; HKYVNRV; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; O64624; -.
DR PRO; PR:O64624; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; O64624; baseline and differential.
DR Genevisible; O64624; AT.
DR GO; GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
DR GO; GO:0003729; F:mRNA binding; IDA:TAIR.
DR Gene3D; 1.25.40.10; -; 6.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR InterPro; IPR019734; TPR_repeat.
DR Pfam; PF01535; PPR; 1.
DR Pfam; PF12854; PPR_1; 1.
DR Pfam; PF13041; PPR_2; 4.
DR Pfam; PF13812; PPR_3; 3.
DR TIGRFAMs; TIGR00756; PPR; 15.
DR PROSITE; PS51375; PPR; 16.
PE 2: Evidence at transcript level;
KW Chloroplast; Plastid; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..77
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN 78..822
FT /note="Pentatricopeptide repeat-containing protein
FT At2g18940, chloroplastic"
FT /id="PRO_0000356022"
FT REPEAT 209..243
FT /note="PPR 1"
FT REPEAT 244..279
FT /note="PPR 2"
FT REPEAT 280..314
FT /note="PPR 3"
FT REPEAT 315..349
FT /note="PPR 4"
FT REPEAT 350..384
FT /note="PPR 5"
FT REPEAT 385..419
FT /note="PPR 6"
FT REPEAT 420..454
FT /note="PPR 7"
FT REPEAT 455..489
FT /note="PPR 8"
FT REPEAT 490..524
FT /note="PPR 9"
FT REPEAT 525..559
FT /note="PPR 10"
FT REPEAT 560..594
FT /note="PPR 11"
FT REPEAT 595..629
FT /note="PPR 12"
FT REPEAT 630..664
FT /note="PPR 13"
FT REPEAT 665..699
FT /note="PPR 14"
FT REPEAT 700..734
FT /note="PPR 15"
FT REPEAT 735..769
FT /note="PPR 16"
FT REPEAT 770..800
FT /note="PPR 17"
FT REGION 1..42
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 19..35
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 822 AA; 92238 MW; D32DC5CEF26D2E98 CRC64;
MDGALFPHKP PYPIQSKRPP PSQSSNQSIK FSSATLHLPP PSPPSFPLDS LLHHLVHLSS
PPPRHSNSAA ARFPSLEVST DSSSSKPILG IEIENERNGS LKLLCKKEVV LVNSIVEQPL
TGLSRFFDSV KSELLRTDLV SLVKGLDDSG HWERAVFLFE WLVLSSNSGA LKLDHQVIEI
FVRILGRESQ YSVAAKLLDK IPLQEYLLDV RAYTTILHAY SRTGKYEKAI DLFERMKEMG
PSPTLVTYNV ILDVFGKMGR SWRKILGVLD EMRSKGLKFD EFTCSTVLSA CAREGLLREA
KEFFAELKSC GYEPGTVTYN ALLQVFGKAG VYTEALSVLK EMEENSCPAD SVTYNELVAA
YVRAGFSKEA AGVIEMMTKK GVMPNAITYT TVIDAYGKAG KEDEALKLFY SMKEAGCVPN
TCTYNAVLSL LGKKSRSNEM IKMLCDMKSN GCSPNRATWN TMLALCGNKG MDKFVNRVFR
EMKSCGFEPD RDTFNTLISA YGRCGSEVDA SKMYGEMTRA GFNACVTTYN ALLNALARKG
DWRSGENVIS DMKSKGFKPT ETSYSLMLQC YAKGGNYLGI ERIENRIKEG QIFPSWMLLR
TLLLANFKCR ALAGSERAFT LFKKHGYKPD MVIFNSMLSI FTRNNMYDQA EGILESIRED
GLSPDLVTYN SLMDMYVRRG ECWKAEEILK TLEKSQLKPD LVSYNTVIKG FCRRGLMQEA
VRMLSEMTER GIRPCIFTYN TFVSGYTAMG MFAEIEDVIE CMAKNDCRPN ELTFKMVVDG
YCRAGKYSEA MDFVSKIKTF DPCFDDQSIQ RLALRVRENL ES
