PP164_ARATH
ID PP164_ARATH Reviewed; 693 AA.
AC Q6NKW7; O64561;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 16-DEC-2008, sequence version 2.
DT 03-AUG-2022, entry version 105.
DE RecName: Full=Pentatricopeptide repeat-containing protein At2g19280;
GN OrderedLocusNames=At2g19280; ORFNames=F27F23.8;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Shinn P., Chen H., Cheuk R.F., Kim C.J., Carninci P., Hayashizaki Y.,
RA Ishida J., Kamiya A., Kawai J., Narusaka M., Sakurai T., Satou M., Seki M.,
RA Shinozaki K., Ecker J.R.;
RT "Arabidopsis ORF clones.";
RL Submitted (APR-2004) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC003058; AAC16458.1; -; Genomic_DNA.
DR EMBL; CP002685; AEC06863.1; -; Genomic_DNA.
DR EMBL; CP002685; AEC06864.1; -; Genomic_DNA.
DR EMBL; CP002685; ANM62931.1; -; Genomic_DNA.
DR EMBL; CP002685; ANM62932.1; -; Genomic_DNA.
DR EMBL; BT012576; AAS99720.1; -; mRNA.
DR EMBL; AK221302; BAD94048.1; -; mRNA.
DR EMBL; AK229469; BAF01327.1; -; mRNA.
DR PIR; T01276; T01276.
DR RefSeq; NP_001189552.1; NM_001202623.2.
DR RefSeq; NP_001325053.1; NM_001335631.1.
DR RefSeq; NP_001325054.1; NM_001335630.1.
DR RefSeq; NP_179518.1; NM_127485.4.
DR AlphaFoldDB; Q6NKW7; -.
DR SMR; Q6NKW7; -.
DR PaxDb; Q6NKW7; -.
DR PRIDE; Q6NKW7; -.
DR EnsemblPlants; AT2G19280.1; AT2G19280.1; AT2G19280.
DR EnsemblPlants; AT2G19280.2; AT2G19280.2; AT2G19280.
DR EnsemblPlants; AT2G19280.3; AT2G19280.3; AT2G19280.
DR EnsemblPlants; AT2G19280.4; AT2G19280.4; AT2G19280.
DR GeneID; 816445; -.
DR Gramene; AT2G19280.1; AT2G19280.1; AT2G19280.
DR Gramene; AT2G19280.2; AT2G19280.2; AT2G19280.
DR Gramene; AT2G19280.3; AT2G19280.3; AT2G19280.
DR Gramene; AT2G19280.4; AT2G19280.4; AT2G19280.
DR KEGG; ath:AT2G19280; -.
DR Araport; AT2G19280; -.
DR TAIR; locus:2047660; AT2G19280.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_12_1; -.
DR InParanoid; Q6NKW7; -.
DR OMA; WFYMSEH; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q6NKW7; -.
DR PRO; PR:Q6NKW7; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; Q6NKW7; baseline and differential.
DR Genevisible; Q6NKW7; AT.
DR Gene3D; 1.25.40.10; -; 5.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 2.
DR Pfam; PF13041; PPR_2; 5.
DR TIGRFAMs; TIGR00756; PPR; 8.
DR PROSITE; PS51375; PPR; 13.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..693
FT /note="Pentatricopeptide repeat-containing protein
FT At2g19280"
FT /id="PRO_0000356023"
FT REPEAT 200..234
FT /note="PPR 1"
FT REPEAT 235..269
FT /note="PPR 2"
FT REPEAT 270..304
FT /note="PPR 3"
FT REPEAT 305..339
FT /note="PPR 4"
FT REPEAT 340..370
FT /note="PPR 5"
FT REPEAT 372..406
FT /note="PPR 6"
FT REPEAT 407..441
FT /note="PPR 7"
FT REPEAT 442..476
FT /note="PPR 8"
FT REPEAT 477..511
FT /note="PPR 9"
FT REPEAT 512..546
FT /note="PPR 10"
FT REPEAT 547..581
FT /note="PPR 11"
FT REPEAT 582..616
FT /note="PPR 12"
FT REPEAT 617..651
FT /note="PPR 13"
FT CONFLICT 192
FT /note="E -> K (in Ref. 3; AAS99720 and 4; BAD94048/
FT BAF01327)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 693 AA; 78751 MW; E80AC1D2480C133D CRC64;
MWVSIFNLKS SGLNHFCTRT KAFRYFWCRT FSLASLSENN SRFQTDSSRL PYSGSRYYHS
SSKHFGEDFV SILKNIDVPR DCVETIRNVL VKHNWIQKYE SGFSTELDQY TVIRILDDLF
EETLDASIVL YFFRWSELWI GVEHSSRSIS RMIHILVSGN MNYRAVDMLL CLVKKCSGEE
RSLCLVMKDL FETRIDRRVL ETVFSILIDC CIRERKVNMA LKLTYKVDQF GIFPSRGVCI
SLLKEILRVH GLELAREFVE HMLSRGRHLN AAVLSLFIRK YCSDGYFDKG WELLMGMKHY
GIRPDIVAFT VFIDKLCKAG FLKEATSVLF KLKLFGISQD SVSVSSVIDG FCKVGKPEEA
IKLIHSFRLR PNIFVYSSFL SNICSTGDML RASTIFQEIF ELGLLPDCVC YTTMIDGYCN
LGRTDKAFQY FGALLKSGNP PSLTTSTILI GACSRFGSIS DAESVFRNMK TEGLKLDVVT
YNNLMHGYGK THQLNKVFEL IDEMRSAGIS PDVATYNILI HSMVVRGYID EANEIISELI
RRGFVPSTLA FTDVIGGFSK RGDFQEAFIL WFYMADLRMK PDVVTCSALL HGYCKAQRME
KAIVLFNKLL DAGLKPDVVL YNTLIHGYCS VGDIEKACEL IGLMVQRGML PNESTHHALV
LGLEGKRFVN SETHASMLLE EIIVAKWHLT SGG
