PP165_ARATH
ID PP165_ARATH Reviewed; 534 AA.
AC Q9SIL5;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2000, sequence version 1.
DT 03-AUG-2022, entry version 120.
DE RecName: Full=Pentatricopeptide repeat-containing protein At2g20540;
GN Name=PCMP-E78; OrderedLocusNames=At2g20540; ORFNames=T13C7.13;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=17147637; DOI=10.1111/j.1467-7652.2006.00183.x;
RA Underwood B.A., Vanderhaeghen R., Whitford R., Town C.D., Hilson P.;
RT "Simultaneous high-throughput recombinational cloning of open reading
RT frames in closed and open configurations.";
RL Plant Biotechnol. J. 4:317-324(2006).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-E subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC007109; AAD25654.1; -; Genomic_DNA.
DR EMBL; CP002685; AEC07025.1; -; Genomic_DNA.
DR EMBL; DQ056537; AAY78689.1; -; mRNA.
DR PIR; E84590; E84590.
DR RefSeq; NP_179644.1; NM_127614.2.
DR AlphaFoldDB; Q9SIL5; -.
DR SMR; Q9SIL5; -.
DR BioGRID; 1929; 3.
DR STRING; 3702.AT2G20540.1; -.
DR PaxDb; Q9SIL5; -.
DR PRIDE; Q9SIL5; -.
DR ProteomicsDB; 249139; -.
DR EnsemblPlants; AT2G20540.1; AT2G20540.1; AT2G20540.
DR GeneID; 816576; -.
DR Gramene; AT2G20540.1; AT2G20540.1; AT2G20540.
DR KEGG; ath:AT2G20540; -.
DR Araport; AT2G20540; -.
DR TAIR; locus:2054789; AT2G20540.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_0_6_1; -.
DR InParanoid; Q9SIL5; -.
DR OMA; FRLMQME; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9SIL5; -.
DR PRO; PR:Q9SIL5; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; Q9SIL5; baseline and differential.
DR Genevisible; Q9SIL5; AT.
DR GO; GO:0005739; C:mitochondrion; IEA:GOC.
DR GO; GO:0080156; P:mitochondrial mRNA modification; IMP:TAIR.
DR Gene3D; 1.25.40.10; -; 3.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 3.
DR Pfam; PF13041; PPR_2; 2.
DR SUPFAM; SSF48452; SSF48452; 1.
DR TIGRFAMs; TIGR00756; PPR; 6.
DR PROSITE; PS51375; PPR; 12.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..534
FT /note="Pentatricopeptide repeat-containing protein
FT At2g20540"
FT /id="PRO_0000356024"
FT REPEAT 41..71
FT /note="PPR 1"
FT REPEAT 72..106
FT /note="PPR 2"
FT REPEAT 108..142
FT /note="PPR 3"
FT REPEAT 143..173
FT /note="PPR 4"
FT REPEAT 174..208
FT /note="PPR 5"
FT REPEAT 209..239
FT /note="PPR 6"
FT REPEAT 240..274
FT /note="PPR 7"
FT REPEAT 275..305
FT /note="PPR 8"
FT REPEAT 306..340
FT /note="PPR 9"
FT REPEAT 341..371
FT /note="PPR 10"
FT REPEAT 377..407
FT /note="PPR 11"
FT REGION 412..487
FT /note="Type E motif"
FT REGION 488..518
FT /note="Type E(+) motif"
SQ SEQUENCE 534 AA; 60880 MW; 91389F1AB1675EF3 CRC64;
MAFHGIREVE NYFIPFLQRV KSRNEWKKIN ASIIIHGLSQ SSFMVTKMVD FCDKIEDMDY
ATRLFNQVSN PNVFLYNSII RAYTHNSLYC DVIRIYKQLL RKSFELPDRF TFPFMFKSCA
SLGSCYLGKQ VHGHLCKFGP RFHVVTENAL IDMYMKFDDL VDAHKVFDEM YERDVISWNS
LLSGYARLGQ MKKAKGLFHL MLDKTIVSWT AMISGYTGIG CYVEAMDFFR EMQLAGIEPD
EISLISVLPS CAQLGSLELG KWIHLYAERR GFLKQTGVCN ALIEMYSKCG VISQAIQLFG
QMEGKDVISW STMISGYAYH GNAHGAIETF NEMQRAKVKP NGITFLGLLS ACSHVGMWQE
GLRYFDMMRQ DYQIEPKIEH YGCLIDVLAR AGKLERAVEI TKTMPMKPDS KIWGSLLSSC
RTPGNLDVAL VAMDHLVELE PEDMGNYVLL ANIYADLGKW EDVSRLRKMI RNENMKKTPG
GSLIEVNNIV QEFVSGDNSK PFWTEISIVL QLFTSHQDQD VITNNNALAF IGIV
