PP167_ARATH
ID PP167_ARATH Reviewed; 597 AA.
AC Q9SKQ4;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2000, sequence version 1.
DT 03-AUG-2022, entry version 117.
DE RecName: Full=Pentatricopeptide repeat-containing protein At2g21090;
GN Name=PCMP-E48; OrderedLocusNames=At2g21090; ORFNames=F26H11.15;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14993207; DOI=10.1101/gr.1515604;
RA Castelli V., Aury J.-M., Jaillon O., Wincker P., Clepet C., Menard M.,
RA Cruaud C., Quetier F., Scarpelli C., Schaechter V., Temple G., Caboche M.,
RA Weissenbach J., Salanoubat M.;
RT "Whole genome sequence comparisons and 'full-length' cDNA sequences: a
RT combined approach to evaluate and improve Arabidopsis genome annotation.";
RL Genome Res. 14:406-413(2004).
RN [4]
RP GENE FAMILY.
RX PubMed=10809006; DOI=10.1023/a:1006352315928;
RA Aubourg S., Boudet N., Kreis M., Lecharny A.;
RT "In Arabidopsis thaliana, 1% of the genome codes for a novel protein family
RT unique to plants.";
RL Plant Mol. Biol. 42:603-613(2000).
RN [5]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-E subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC006264; AAD29807.1; -; Genomic_DNA.
DR EMBL; CP002685; AEC07122.1; -; Genomic_DNA.
DR EMBL; BX820424; -; NOT_ANNOTATED_CDS; mRNA.
DR PIR; A84597; A84597.
DR RefSeq; NP_179705.1; NM_127679.4.
DR AlphaFoldDB; Q9SKQ4; -.
DR SMR; Q9SKQ4; -.
DR PaxDb; Q9SKQ4; -.
DR PRIDE; Q9SKQ4; -.
DR ProteomicsDB; 250497; -.
DR EnsemblPlants; AT2G21090.1; AT2G21090.1; AT2G21090.
DR GeneID; 816644; -.
DR Gramene; AT2G21090.1; AT2G21090.1; AT2G21090.
DR KEGG; ath:AT2G21090; -.
DR Araport; AT2G21090; -.
DR TAIR; locus:2047017; AT2G21090.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_0_2_1; -.
DR InParanoid; Q9SKQ4; -.
DR OMA; LNRQAHG; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9SKQ4; -.
DR PRO; PR:Q9SKQ4; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; Q9SKQ4; baseline and differential.
DR Genevisible; Q9SKQ4; AT.
DR Gene3D; 1.25.40.10; -; 5.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 2.
DR Pfam; PF12854; PPR_1; 1.
DR Pfam; PF13041; PPR_2; 3.
DR TIGRFAMs; TIGR00756; PPR; 7.
DR PROSITE; PS51375; PPR; 14.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..597
FT /note="Pentatricopeptide repeat-containing protein
FT At2g21090"
FT /id="PRO_0000356026"
FT REPEAT 45..79
FT /note="PPR 1"
FT REPEAT 81..111
FT /note="PPR 2"
FT REPEAT 112..142
FT /note="PPR 3"
FT REPEAT 143..177
FT /note="PPR 4"
FT REPEAT 178..212
FT /note="PPR 5"
FT REPEAT 213..243
FT /note="PPR 6"
FT REPEAT 244..274
FT /note="PPR 7"
FT REPEAT 275..309
FT /note="PPR 8"
FT REPEAT 310..344
FT /note="PPR 9"
FT REPEAT 345..375
FT /note="PPR 10"
FT REPEAT 377..411
FT /note="PPR 11"
FT REPEAT 412..447
FT /note="PPR 12"
FT REPEAT 448..478
FT /note="PPR 13"
FT REGION 483..558
FT /note="Type E motif"
FT REGION 559..591
FT /note="Type E(+) motif"
SQ SEQUENCE 597 AA; 67518 MW; DD3AAF8713778FFF CRC64;
MPISNPRKRP ICVAQSFLSK HATKAELSQA VSRLESLTQQ GIRLPFDLLA SLLQQCGDTK
SLKQGKWIHR HLKITGFKRP NTLLSNHLIG MYMKCGKPID ACKVFDQMHL RNLYSWNNMV
SGYVKSGMLV RARVVFDSMP ERDVVSWNTM VIGYAQDGNL HEALWFYKEF RRSGIKFNEF
SFAGLLTACV KSRQLQLNRQ AHGQVLVAGF LSNVVLSCSI IDAYAKCGQM ESAKRCFDEM
TVKDIHIWTT LISGYAKLGD MEAAEKLFCE MPEKNPVSWT ALIAGYVRQG SGNRALDLFR
KMIALGVKPE QFTFSSCLCA SASIASLRHG KEIHGYMIRT NVRPNAIVIS SLIDMYSKSG
SLEASERVFR ICDDKHDCVF WNTMISALAQ HGLGHKALRM LDDMIKFRVQ PNRTTLVVIL
NACSHSGLVE EGLRWFESMT VQHGIVPDQE HYACLIDLLG RAGCFKELMR KIEEMPFEPD
KHIWNAILGV CRIHGNEELG KKAADELIKL DPESSAPYIL LSSIYADHGK WELVEKLRGV
MKKRRVNKEK AVSWIEIEKK VEAFTVSDGS HAHARKEEIY FILHNLAAVI EEEASRT
