PP168_ARATH
ID PP168_ARATH Reviewed; 786 AA.
AC Q9SHZ8;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2000, sequence version 1.
DT 03-AUG-2022, entry version 121.
DE RecName: Full=Pentatricopeptide repeat-containing protein At2g22070;
GN Name=PCMP-H41; OrderedLocusNames=At2g22070; ORFNames=T16B14.8;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=10809006; DOI=10.1023/a:1006352315928;
RA Aubourg S., Boudet N., Kreis M., Lecharny A.;
RT "In Arabidopsis thaliana, 1% of the genome codes for a novel protein family
RT unique to plants.";
RL Plant Mol. Biol. 42:603-613(2000).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC007232; AAD25817.1; -; Genomic_DNA.
DR EMBL; CP002685; AEC07259.1; -; Genomic_DNA.
DR PIR; F84608; F84608.
DR RefSeq; NP_179798.1; NM_127776.3.
DR AlphaFoldDB; Q9SHZ8; -.
DR SMR; Q9SHZ8; -.
DR PaxDb; Q9SHZ8; -.
DR PRIDE; Q9SHZ8; -.
DR ProteomicsDB; 250498; -.
DR EnsemblPlants; AT2G22070.1; AT2G22070.1; AT2G22070.
DR GeneID; 816742; -.
DR Gramene; AT2G22070.1; AT2G22070.1; AT2G22070.
DR KEGG; ath:AT2G22070; -.
DR Araport; AT2G22070; -.
DR TAIR; locus:2055919; AT2G22070.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_15_1_1; -.
DR InParanoid; Q9SHZ8; -.
DR OMA; MIVGYNQ; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9SHZ8; -.
DR PRO; PR:Q9SHZ8; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; Q9SHZ8; baseline and differential.
DR Genevisible; Q9SHZ8; AT.
DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IBA:GO_Central.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; -; 6.
DR InterPro; IPR032867; DYW_dom.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR045215; PPR_prot_plant.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR InterPro; IPR019734; TPR_repeat.
DR PANTHER; PTHR24015; PTHR24015; 1.
DR Pfam; PF14432; DYW_deaminase; 1.
DR Pfam; PF01535; PPR; 8.
DR Pfam; PF13041; PPR_2; 3.
DR Pfam; PF13176; TPR_7; 1.
DR SUPFAM; SSF48452; SSF48452; 1.
DR TIGRFAMs; TIGR00756; PPR; 5.
DR PROSITE; PS51375; PPR; 15.
PE 3: Inferred from homology;
KW Reference proteome; Repeat.
FT CHAIN 1..786
FT /note="Pentatricopeptide repeat-containing protein
FT At2g22070"
FT /id="PRO_0000356027"
FT REPEAT 48..78
FT /note="PPR 1"
FT REPEAT 79..109
FT /note="PPR 2"
FT REPEAT 110..144
FT /note="PPR 3"
FT REPEAT 145..179
FT /note="PPR 4"
FT REPEAT 180..214
FT /note="PPR 5"
FT REPEAT 215..241
FT /note="PPR 6"
FT REPEAT 242..276
FT /note="PPR 7"
FT REPEAT 278..312
FT /note="PPR 8"
FT REPEAT 313..347
FT /note="PPR 9"
FT REPEAT 350..376
FT /note="PPR 10"
FT REPEAT 377..411
FT /note="PPR 11"
FT REPEAT 412..446
FT /note="PPR 12"
FT REPEAT 447..477
FT /note="PPR 13"
FT REPEAT 479..513
FT /note="PPR 14"
FT REPEAT 514..548
FT /note="PPR 15"
FT REPEAT 550..580
FT /note="PPR 16"
FT REGION 585..660
FT /note="Type E motif"
FT REGION 661..691
FT /note="Type E(+) motif"
FT REGION 692..786
FT /note="Type DYW motif"
SQ SEQUENCE 786 AA; 88033 MW; 722CA52FD8A67EC4 CRC64;
MDAPVPLSLS TLLELCTNLL QKSVNKSNGR FTAQLVHCRV IKSGLMFSVY LMNNLMNVYS
KTGYALHARK LFDEMPLRTA FSWNTVLSAY SKRGDMDSTC EFFDQLPQRD SVSWTTMIVG
YKNIGQYHKA IRVMGDMVKE GIEPTQFTLT NVLASVAATR CMETGKKVHS FIVKLGLRGN
VSVSNSLLNM YAKCGDPMMA KFVFDRMVVR DISSWNAMIA LHMQVGQMDL AMAQFEQMAE
RDIVTWNSMI SGFNQRGYDL RALDIFSKML RDSLLSPDRF TLASVLSACA NLEKLCIGKQ
IHSHIVTTGF DISGIVLNAL ISMYSRCGGV ETARRLIEQR GTKDLKIEGF TALLDGYIKL
GDMNQAKNIF VSLKDRDVVA WTAMIVGYEQ HGSYGEAINL FRSMVGGGQR PNSYTLAAML
SVASSLASLS HGKQIHGSAV KSGEIYSVSV SNALITMYAK AGNITSASRA FDLIRCERDT
VSWTSMIIAL AQHGHAEEAL ELFETMLMEG LRPDHITYVG VFSACTHAGL VNQGRQYFDM
MKDVDKIIPT LSHYACMVDL FGRAGLLQEA QEFIEKMPIE PDVVTWGSLL SACRVHKNID
LGKVAAERLL LLEPENSGAY SALANLYSAC GKWEEAAKIR KSMKDGRVKK EQGFSWIEVK
HKVHVFGVED GTHPEKNEIY MTMKKIWDEI KKMGYVPDTA SVLHDLEEEV KEQILRHHSE
KLAIAFGLIS TPDKTTLRIM KNLRVCNDCH TAIKFISKLV GREIIVRDTT RFHHFKDGFC
SCRDYW
