PP169_ARATH
ID PP169_ARATH Reviewed; 681 AA.
AC Q9SJZ3;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2000, sequence version 1.
DT 25-MAY-2022, entry version 112.
DE RecName: Full=Pentatricopeptide repeat-containing protein At2g22410, mitochondrial;
DE Flags: Precursor;
GN Name=PCMP-E28; OrderedLocusNames=At2g22410; ORFNames=F14M13.19;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP GENE FAMILY.
RX PubMed=10809006; DOI=10.1023/a:1006352315928;
RA Aubourg S., Boudet N., Kreis M., Lecharny A.;
RT "In Arabidopsis thaliana, 1% of the genome codes for a novel protein family
RT unique to plants.";
RL Plant Mol. Biol. 42:603-613(2000).
RN [5]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-E subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC006592; AAD22358.1; -; Genomic_DNA.
DR EMBL; CP002685; AEC07300.1; -; Genomic_DNA.
DR EMBL; AY064984; AAL57637.1; -; mRNA.
DR PIR; C84612; C84612.
DR RefSeq; NP_179827.1; NM_127805.3.
DR AlphaFoldDB; Q9SJZ3; -.
DR SMR; Q9SJZ3; -.
DR STRING; 3702.AT2G22410.1; -.
DR PaxDb; Q9SJZ3; -.
DR PRIDE; Q9SJZ3; -.
DR ProteomicsDB; 250499; -.
DR EnsemblPlants; AT2G22410.1; AT2G22410.1; AT2G22410.
DR GeneID; 816772; -.
DR Gramene; AT2G22410.1; AT2G22410.1; AT2G22410.
DR KEGG; ath:AT2G22410; -.
DR Araport; AT2G22410; -.
DR TAIR; locus:2041198; AT2G22410.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_0_1_1; -.
DR InParanoid; Q9SJZ3; -.
DR OMA; FHEMQAS; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9SJZ3; -.
DR PRO; PR:Q9SJZ3; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; Q9SJZ3; baseline and differential.
DR Genevisible; Q9SJZ3; AT.
DR GO; GO:0009507; C:chloroplast; IBA:GO_Central.
DR GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR GO; GO:1900865; P:chloroplast RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; -; 4.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 3.
DR Pfam; PF12854; PPR_1; 1.
DR Pfam; PF13041; PPR_2; 4.
DR TIGRFAMs; TIGR00756; PPR; 6.
DR PROSITE; PS51375; PPR; 14.
PE 2: Evidence at transcript level;
KW Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..32
FT /note="Mitochondrion"
FT /evidence="ECO:0000255"
FT CHAIN 33..681
FT /note="Pentatricopeptide repeat-containing protein
FT At2g22410, mitochondrial"
FT /id="PRO_0000356028"
FT REPEAT 117..151
FT /note="PPR 1"
FT REPEAT 155..189
FT /note="PPR 2"
FT REPEAT 190..220
FT /note="PPR 3"
FT REPEAT 221..255
FT /note="PPR 4"
FT REPEAT 256..290
FT /note="PPR 5"
FT REPEAT 291..321
FT /note="PPR 6"
FT REPEAT 322..356
FT /note="PPR 7"
FT REPEAT 357..387
FT /note="PPR 8"
FT REPEAT 388..422
FT /note="PPR 9"
FT REPEAT 423..453
FT /note="PPR 10"
FT REPEAT 454..488
FT /note="PPR 11"
FT REPEAT 489..519
FT /note="PPR 12"
FT REPEAT 525..555
FT /note="PPR 13"
FT REGION 560..635
FT /note="Type E motif"
FT REGION 636..666
FT /note="Type E(+) motif"
SQ SEQUENCE 681 AA; 76714 MW; ACE26DEA3617F6F7 CRC64;
MNISKAKLLL LPPPLTPKLN RSLYSHSQRR TRSLPHHRDK PINWNSTHSF VLHNPLLSLL
EKCKLLLHLK QIQAQMIING LILDPFASSR LIAFCALSES RYLDYSVKIL KGIENPNIFS
WNVTIRGFSE SENPKESFLL YKQMLRHGCC ESRPDHFTYP VLFKVCADLR LSSLGHMILG
HVLKLRLELV SHVHNASIHM FASCGDMENA RKVFDESPVR DLVSWNCLIN GYKKIGEAEK
AIYVYKLMES EGVKPDDVTM IGLVSSCSML GDLNRGKEFY EYVKENGLRM TIPLVNALMD
MFSKCGDIHE ARRIFDNLEK RTIVSWTTMI SGYARCGLLD VSRKLFDDME EKDVVLWNAM
IGGSVQAKRG QDALALFQEM QTSNTKPDEI TMIHCLSACS QLGALDVGIW IHRYIEKYSL
SLNVALGTSL VDMYAKCGNI SEALSVFHGI QTRNSLTYTA IIGGLALHGD ASTAISYFNE
MIDAGIAPDE ITFIGLLSAC CHGGMIQTGR DYFSQMKSRF NLNPQLKHYS IMVDLLGRAG
LLEEADRLME SMPMEADAAV WGALLFGCRM HGNVELGEKA AKKLLELDPS DSGIYVLLDG
MYGEANMWED AKRARRMMNE RGVEKIPGCS SIEVNGIVCE FIVRDKSRPE SEKIYDRLHC
LGRHMRSSLS VLFSEYEITN N
