PP172_ARATH
ID PP172_ARATH Reviewed; 868 AA.
AC Q9ZUW3; Q8S8I6;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-1999, sequence version 1.
DT 03-AUG-2022, entry version 121.
DE RecName: Full=Pentatricopeptide repeat-containing protein At2g27610;
GN Name=PCMP-H60; OrderedLocusNames=At2g27610; ORFNames=F10A12.28, F15K20.29;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=10809006; DOI=10.1023/a:1006352315928;
RA Aubourg S., Boudet N., Kreis M., Lecharny A.;
RT "In Arabidopsis thaliana, 1% of the genome codes for a novel protein family
RT unique to plants.";
RL Plant Mol. Biol. 42:603-613(2000).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC005824; AAC73039.1; -; Genomic_DNA.
DR EMBL; AC006232; AAM15176.1; -; Genomic_DNA.
DR EMBL; CP002685; AEC08020.1; -; Genomic_DNA.
DR PIR; G84674; G84674.
DR RefSeq; NP_180329.1; NM_128320.1.
DR AlphaFoldDB; Q9ZUW3; -.
DR SMR; Q9ZUW3; -.
DR IntAct; Q9ZUW3; 1.
DR PaxDb; Q9ZUW3; -.
DR PRIDE; Q9ZUW3; -.
DR ProteomicsDB; 249142; -.
DR EnsemblPlants; AT2G27610.1; AT2G27610.1; AT2G27610.
DR GeneID; 817307; -.
DR Gramene; AT2G27610.1; AT2G27610.1; AT2G27610.
DR KEGG; ath:AT2G27610; -.
DR Araport; AT2G27610; -.
DR TAIR; locus:2038603; AT2G27610.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_15_7_1; -.
DR InParanoid; Q9ZUW3; -.
DR OMA; QPDTNYV; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9ZUW3; -.
DR PRO; PR:Q9ZUW3; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; Q9ZUW3; baseline and differential.
DR Genevisible; Q9ZUW3; AT.
DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IBA:GO_Central.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; -; 6.
DR InterPro; IPR032867; DYW_dom.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR045215; PPR_prot_plant.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR PANTHER; PTHR24015; PTHR24015; 4.
DR Pfam; PF14432; DYW_deaminase; 1.
DR Pfam; PF01535; PPR; 6.
DR Pfam; PF13041; PPR_2; 4.
DR SUPFAM; SSF48452; SSF48452; 1.
DR TIGRFAMs; TIGR00756; PPR; 6.
DR PROSITE; PS51375; PPR; 16.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..868
FT /note="Pentatricopeptide repeat-containing protein
FT At2g27610"
FT /id="PRO_0000356031"
FT REPEAT 57..91
FT /note="PPR 1"
FT REPEAT 92..126
FT /note="PPR 2"
FT REPEAT 127..157
FT /note="PPR 3"
FT REPEAT 158..192
FT /note="PPR 4"
FT REPEAT 193..227
FT /note="PPR 5"
FT REPEAT 228..258
FT /note="PPR 6"
FT REPEAT 259..293
FT /note="PPR 7"
FT REPEAT 294..328
FT /note="PPR 8"
FT REPEAT 329..359
FT /note="PPR 9"
FT REPEAT 361..395
FT /note="PPR 10"
FT REPEAT 396..426
FT /note="PPR 11"
FT REPEAT 427..457
FT /note="PPR 12"
FT REPEAT 458..492
FT /note="PPR 13"
FT REPEAT 493..528
FT /note="PPR 14"
FT REPEAT 529..559
FT /note="PPR 15"
FT REPEAT 560..594
FT /note="PPR 16"
FT REPEAT 595..625
FT /note="PPR 17"
FT REPEAT 631..661
FT /note="PPR 18"
FT REGION 666..741
FT /note="Type E motif"
FT REGION 742..772
FT /note="Type E(+) motif"
FT REGION 773..868
FT /note="Type DYW motif"
SQ SEQUENCE 868 AA; 97185 MW; CB7A3EA2D7D38AF7 CRC64;
MRFTTTIWRP PSLENFKPKF RIYANGVAQV RIYCFGTVSS SRLYNAHNLF DKSPGRDRES
YISLLFGFSR DGRTQEAKRL FLNIHRLGME MDCSIFSSVL KVSATLCDEL FGRQLHCQCI
KFGFLDDVSV GTSLVDTYMK GSNFKDGRKV FDEMKERNVV TWTTLISGYA RNSMNDEVLT
LFMRMQNEGT QPNSFTFAAA LGVLAEEGVG GRGLQVHTVV VKNGLDKTIP VSNSLINLYL
KCGNVRKARI LFDKTEVKSV VTWNSMISGY AANGLDLEAL GMFYSMRLNY VRLSESSFAS
VIKLCANLKE LRFTEQLHCS VVKYGFLFDQ NIRTALMVAY SKCTAMLDAL RLFKEIGCVG
NVVSWTAMIS GFLQNDGKEE AVDLFSEMKR KGVRPNEFTY SVILTALPVI SPSEVHAQVV
KTNYERSSTV GTALLDAYVK LGKVEEAAKV FSGIDDKDIV AWSAMLAGYA QTGETEAAIK
MFGELTKGGI KPNEFTFSSI LNVCAATNAS MGQGKQFHGF AIKSRLDSSL CVSSALLTMY
AKKGNIESAE EVFKRQREKD LVSWNSMISG YAQHGQAMKA LDVFKEMKKR KVKMDGVTFI
GVFAACTHAG LVEEGEKYFD IMVRDCKIAP TKEHNSCMVD LYSRAGQLEK AMKVIENMPN
PAGSTIWRTI LAACRVHKKT ELGRLAAEKI IAMKPEDSAA YVLLSNMYAE SGDWQERAKV
RKLMNERNVK KEPGYSWIEV KNKTYSFLAG DRSHPLKDQI YMKLEDLSTR LKDLGYEPDT
SYVLQDIDDE HKEAVLAQHS ERLAIAFGLI ATPKGSPLLI IKNLRVCGDC HLVIKLIAKI
EEREIVVRDS NRFHHFSSDG VCSCGDFW
