PP173_ARATH
ID PP173_ARATH Reviewed; 442 AA.
AC Q9ZUY1;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 16-DEC-2008, sequence version 2.
DT 03-AUG-2022, entry version 114.
DE RecName: Full=Pentatricopeptide repeat-containing protein At2g27800, mitochondrial;
DE Flags: Precursor;
GN OrderedLocusNames=At2g27800; ORFNames=F15K20.10;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAC73020.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC005824; AAC73020.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002685; AEC08046.1; -; Genomic_DNA.
DR PIR; B84677; B84677.
DR RefSeq; NP_180348.2; NM_128340.3.
DR AlphaFoldDB; Q9ZUY1; -.
DR SMR; Q9ZUY1; -.
DR STRING; 3702.AT2G27800.1; -.
DR PaxDb; Q9ZUY1; -.
DR PRIDE; Q9ZUY1; -.
DR EnsemblPlants; AT2G27800.1; AT2G27800.1; AT2G27800.
DR GeneID; 817327; -.
DR Gramene; AT2G27800.1; AT2G27800.1; AT2G27800.
DR KEGG; ath:AT2G27800; -.
DR Araport; AT2G27800; -.
DR TAIR; locus:2042057; AT2G27800.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_040105_0_0_1; -.
DR InParanoid; Q9ZUY1; -.
DR OMA; STYHITI; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9ZUY1; -.
DR PRO; PR:Q9ZUY1; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; Q9ZUY1; baseline and differential.
DR Genevisible; Q9ZUY1; AT.
DR GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR Gene3D; 1.25.40.10; -; 2.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 1.
DR Pfam; PF12854; PPR_1; 1.
DR Pfam; PF13041; PPR_2; 1.
DR Pfam; PF13812; PPR_3; 1.
DR TIGRFAMs; TIGR00756; PPR; 3.
DR PROSITE; PS51375; PPR; 6.
PE 3: Inferred from homology;
KW Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..67
FT /note="Mitochondrion"
FT /evidence="ECO:0000255"
FT CHAIN 68..442
FT /note="Pentatricopeptide repeat-containing protein
FT At2g27800, mitochondrial"
FT /id="PRO_0000356032"
FT REPEAT 206..236
FT /note="PPR 1"
FT REPEAT 244..286
FT /note="PPR 2"
FT REPEAT 287..322
FT /note="PPR 3"
FT REPEAT 323..357
FT /note="PPR 4"
FT REPEAT 358..392
FT /note="PPR 5"
FT REPEAT 393..427
FT /note="PPR 6"
SQ SEQUENCE 442 AA; 50697 MW; 96C157C2BADC09B7 CRC64;
MSATRSTFLG SIFRTAKARI LISPIARRSL PSPNFTSSRF HTSSSLRQSR IEGSIPRSFL
PSIHVRFHSV SASTWFSSRR TSSQGRLASV SMYIQYSTSV PTRSLRRRIS NRKKSSAKPI
LNVSKFHETI SKLPPRFTPE ELADAITLEE DPFLCFHLFN WASQQPRFTH ENCSYHIAIR
KLGAAKMYQE MDDIVNQVLS VRHIGNENLY NSIIFYFTKA GKLIRAVNIF RHMVTSKNLE
CRPTIRTYHI LFKALLGRGN NSYINHVYME TVRSLFRQMV DSGIEPDVFA LNCLVKGYVL
SLHVNDALRI FHQMSVVYDC EPNSFTYDYL IHGLCAQGRT INARELLSEM KGKGFVPNGK
SYNSLVNAFA LSGEIDDAVK CLWEMIENGR VVDFISYRTL VDESCRKGKY DEATRLLEML
REKQLVDRDS YDKLVNVLHK DL