PP176_ARATH
ID PP176_ARATH Reviewed; 503 AA.
AC Q0WNN7; O64736;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 16-DEC-2008, sequence version 2.
DT 03-AUG-2022, entry version 79.
DE RecName: Full=Pentatricopeptide repeat-containing protein At2g30100, chloroplastic;
DE Flags: Precursor;
GN OrderedLocusNames=At2g30100; ORFNames=T27E13.16;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAC16962.1; Type=Erroneous gene model prediction; Note=The predicted gene has been split into 2 genes: At2g30100 and At2g30105.; Evidence={ECO:0000305};
CC Sequence=BAF01262.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Insertion of a transposable element sequence at position 213.; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC004165; AAC16962.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002685; AEC08344.1; -; Genomic_DNA.
DR EMBL; AK229400; BAF01262.1; ALT_SEQ; mRNA.
DR PIR; T00588; T00588.
DR RefSeq; NP_180571.3; NM_128565.5.
DR AlphaFoldDB; Q0WNN7; -.
DR SMR; Q0WNN7; -.
DR STRING; 3702.AT2G30100.1; -.
DR PaxDb; Q0WNN7; -.
DR PRIDE; Q0WNN7; -.
DR ProteomicsDB; 249145; -.
DR EnsemblPlants; AT2G30100.1; AT2G30100.1; AT2G30100.
DR GeneID; 817561; -.
DR Gramene; AT2G30100.1; AT2G30100.1; AT2G30100.
DR KEGG; ath:AT2G30100; -.
DR Araport; AT2G30100; -.
DR TAIR; locus:2060864; AT2G30100.
DR eggNOG; ENOG502QS05; Eukaryota.
DR HOGENOM; CLU_046053_1_0_1; -.
DR InParanoid; Q0WNN7; -.
DR OMA; TWLLRGY; -.
DR OrthoDB; 1179019at2759; -.
DR PhylomeDB; Q0WNN7; -.
DR PRO; PR:Q0WNN7; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; Q0WNN7; baseline and differential.
DR GO; GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
DR Gene3D; 1.25.40.10; -; 2.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR TIGRFAMs; TIGR00756; PPR; 1.
DR PROSITE; PS51375; PPR; 3.
PE 2: Evidence at transcript level;
KW Chloroplast; Plastid; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..50
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN 51..503
FT /note="Pentatricopeptide repeat-containing protein
FT At2g30100, chloroplastic"
FT /id="PRO_0000356035"
FT REPEAT 341..375
FT /note="PPR 1"
FT REPEAT 376..410
FT /note="PPR 2"
FT REPEAT 411..445
FT /note="PPR 3"
SQ SEQUENCE 503 AA; 57555 MW; CCA88758081AC3DE CRC64;
MAYAHVFASL TISTISLRRF LPRLHRNHSV KPNSRIICNL KLNYSAGKFR EMGLSRSVEL
DQFITSEEEE GEAEEIGEGF FEAIEELERM TREPSDILEE MNHRLSSREL QLMLVYFAQE
GRDSWCTLEV FEWLKKENRV DEEIMELMVS IMCGWVKKLI EDECNAHQVF DLLIEMDCVG
LKPGFSMMDK VIALYCEMGK KESAVLFVKE VLRRRDGFGY SVVGGGGSEG RKGGPVGYLA
WKFMVDGDYR KAVDMVMELR LSGLKPEAYS YLIAMTAIVK ELNSLGKTLR ELKRFARAGF
VAEIDDHDRV LIEKYQSETL SRGLQLATWA VEEGQENDSI IGVVHERLLA MYICAGRGPE
AEKQLWKMKL AGREPEADLH DIVMAICASQ KEVNAVSRLL TRVEFMGSQR KKKTLSWLLR
GYVKGGHFEE AAETLVSMID SGLHPEYIDR VAVMQGMTRK IQRPRDVEAY MSLCKRLFDA
GLVGPCLVYM YIDKYKLWIV KMM
