PP181_ARATH
ID PP181_ARATH Reviewed; 727 AA.
AC P93005;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-1997, sequence version 1.
DT 25-MAY-2022, entry version 121.
DE RecName: Full=Pentatricopeptide repeat-containing protein At2g33680;
GN Name=PCMP-E19; OrderedLocusNames=At2g33680; ORFNames=T1B8.1;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=10809006; DOI=10.1023/a:1006352315928;
RA Aubourg S., Boudet N., Kreis M., Lecharny A.;
RT "In Arabidopsis thaliana, 1% of the genome codes for a novel protein family
RT unique to plants.";
RL Plant Mol. Biol. 42:603-613(2000).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-E subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; U78721; AAC69139.1; -; Genomic_DNA.
DR EMBL; CP002685; AEC08868.1; -; Genomic_DNA.
DR EMBL; CP002685; ANM61541.1; -; Genomic_DNA.
DR EMBL; CP002685; ANM61544.1; -; Genomic_DNA.
DR PIR; C84748; C84748.
DR RefSeq; NP_001318343.1; NM_001336461.1.
DR RefSeq; NP_001323756.1; NM_001336467.1.
DR RefSeq; NP_180924.1; NM_128926.1.
DR AlphaFoldDB; P93005; -.
DR SMR; P93005; -.
DR iPTMnet; P93005; -.
DR PaxDb; P93005; -.
DR PRIDE; P93005; -.
DR EnsemblPlants; AT2G33680.1; AT2G33680.1; AT2G33680.
DR EnsemblPlants; AT2G33680.7; AT2G33680.7; AT2G33680.
DR EnsemblPlants; AT2G33680.8; AT2G33680.8; AT2G33680.
DR GeneID; 817933; -.
DR Gramene; AT2G33680.1; AT2G33680.1; AT2G33680.
DR Gramene; AT2G33680.7; AT2G33680.7; AT2G33680.
DR Gramene; AT2G33680.8; AT2G33680.8; AT2G33680.
DR KEGG; ath:AT2G33680; -.
DR Araport; AT2G33680; -.
DR TAIR; locus:2057630; AT2G33680.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_15_10_1; -.
DR InParanoid; P93005; -.
DR OMA; GSLHDGN; -.
DR PhylomeDB; P93005; -.
DR PRO; PR:P93005; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; P93005; baseline and differential.
DR Genevisible; P93005; AT.
DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IBA:GO_Central.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0010102; P:lateral root morphogenesis; IMP:TAIR.
DR GO; GO:0009266; P:response to temperature stimulus; IEP:TAIR.
DR GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; -; 5.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 2.
DR Pfam; PF12854; PPR_1; 1.
DR Pfam; PF13041; PPR_2; 3.
DR TIGRFAMs; TIGR00756; PPR; 4.
DR PROSITE; PS51375; PPR; 14.
PE 3: Inferred from homology;
KW Reference proteome; Repeat.
FT CHAIN 1..727
FT /note="Pentatricopeptide repeat-containing protein
FT At2g33680"
FT /id="PRO_0000356040"
FT REPEAT 13..47
FT /note="PPR 1"
FT REPEAT 48..78
FT /note="PPR 2"
FT REPEAT 79..116
FT /note="PPR 3"
FT REPEAT 117..150
FT /note="PPR 4"
FT REPEAT 152..182
FT /note="PPR 5"
FT REPEAT 183..213
FT /note="PPR 6"
FT REPEAT 220..254
FT /note="PPR 7"
FT REPEAT 255..285
FT /note="PPR 8"
FT REPEAT 286..320
FT /note="PPR 9"
FT REPEAT 321..355
FT /note="PPR 10"
FT REPEAT 356..386
FT /note="PPR 11"
FT REPEAT 387..421
FT /note="PPR 12"
FT REPEAT 422..456
FT /note="PPR 13"
FT REPEAT 457..487
FT /note="PPR 14"
FT REPEAT 488..522
FT /note="PPR 15"
FT REPEAT 523..553
FT /note="PPR 16"
FT REPEAT 559..593
FT /note="PPR 17"
FT REGION 594..669
FT /note="Type E motif"
FT REGION 670..700
FT /note="Type E(+) motif"
SQ SEQUENCE 727 AA; 80309 MW; C2013059664A54BC CRC64;
MHPSTFQTEL NPHTSTLLKK LTHHSQQRNL VAGRAVHGQI IRTGASTCIQ HANVLVNFYA
KCGKLAKAHS IFNAIICKDV VSWNSLITGY SQNGGISSSY TVMQLFREMR AQDILPNAYT
LAGIFKAESS LQSSTVGRQA HALVVKMSSF GDIYVDTSLV GMYCKAGLVE DGLKVFAYMP
ERNTYTWSTM VSGYATRGRV EEAIKVFNLF LREKEEGSDS DYVFTAVLSS LAATIYVGLG
RQIHCITIKN GLLGFVALSN ALVTMYSKCE SLNEACKMFD SSGDRNSITW SAMVTGYSQN
GESLEAVKLF SRMFSAGIKP SEYTIVGVLN ACSDICYLEE GKQLHSFLLK LGFERHLFAT
TALVDMYAKA GCLADARKGF DCLQERDVAL WTSLISGYVQ NSDNEEALIL YRRMKTAGII
PNDPTMASVL KACSSLATLE LGKQVHGHTI KHGFGLEVPI GSALSTMYSK CGSLEDGNLV
FRRTPNKDVV SWNAMISGLS HNGQGDEALE LFEEMLAEGM EPDDVTFVNI ISACSHKGFV
ERGWFYFNMM SDQIGLDPKV DHYACMVDLL SRAGQLKEAK EFIESANIDH GLCLWRILLS
ACKNHGKCEL GVYAGEKLMA LGSRESSTYV QLSGIYTALG RMRDVERVWK HMRANGVSKE
VGCSWIELKN QYHVFVVGDT MHPMIEETKD LVCLVSRQMI EEGFVTVLDS SFVEEEEGTQ
LSTSFII
