PP187_ARATH
ID PP187_ARATH Reviewed; 497 AA.
AC Q9SJN2; Q0WVA7; Q6ICY0;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2000, sequence version 1.
DT 03-AUG-2022, entry version 116.
DE RecName: Full=Pentatricopeptide repeat-containing protein At2g36240;
GN OrderedLocusNames=At2g36240; ORFNames=F2H17.15;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 10-497.
RC STRAIN=cv. Columbia;
RA Shinn P., Chen H., Cheuk R.F., Kim C.J., Ecker J.R.;
RT "Arabidopsis ORF clones.";
RL Submitted (JUL-2004) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAT44969.1; Type=Erroneous initiation; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC006921; AAD21441.1; -; Genomic_DNA.
DR EMBL; CP002685; AEC09220.1; -; Genomic_DNA.
DR EMBL; AK226848; BAE98941.1; -; mRNA.
DR EMBL; BT014893; AAT44969.1; ALT_INIT; mRNA.
DR EMBL; BT015026; AAT70477.1; -; mRNA.
DR PIR; D84778; D84778.
DR RefSeq; NP_181166.3; NM_129182.6.
DR AlphaFoldDB; Q9SJN2; -.
DR SMR; Q9SJN2; -.
DR STRING; 3702.AT2G36240.1; -.
DR PaxDb; Q9SJN2; -.
DR PRIDE; Q9SJN2; -.
DR ProteomicsDB; 250503; -.
DR EnsemblPlants; AT2G36240.1; AT2G36240.1; AT2G36240.
DR GeneID; 818196; -.
DR Gramene; AT2G36240.1; AT2G36240.1; AT2G36240.
DR KEGG; ath:AT2G36240; -.
DR Araport; AT2G36240; -.
DR TAIR; locus:2049465; AT2G36240.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_028941_1_0_1; -.
DR InParanoid; Q9SJN2; -.
DR OMA; VSNPCPC; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9SJN2; -.
DR PRO; PR:Q9SJN2; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; Q9SJN2; baseline and differential.
DR Genevisible; Q9SJN2; AT.
DR Gene3D; 1.25.40.10; -; 3.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 3.
DR Pfam; PF13041; PPR_2; 3.
DR TIGRFAMs; TIGR00756; PPR; 6.
DR PROSITE; PS51375; PPR; 10.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..497
FT /note="Pentatricopeptide repeat-containing protein
FT At2g36240"
FT /id="PRO_0000356046"
FT REPEAT 156..186
FT /note="PPR 1"
FT REPEAT 192..226
FT /note="PPR 2"
FT REPEAT 227..261
FT /note="PPR 3"
FT REPEAT 262..296
FT /note="PPR 4"
FT REPEAT 297..331
FT /note="PPR 5"
FT REPEAT 332..366
FT /note="PPR 6"
FT REPEAT 367..401
FT /note="PPR 7"
FT REPEAT 402..436
FT /note="PPR 8"
FT REPEAT 437..471
FT /note="PPR 9"
FT CONFLICT 411
FT /note="R -> G (in Ref. 3; BAE98941)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 497 AA; 56356 MW; 62B37EB4CC23D544 CRC64;
MRWNKKNVIS LVSKSHHLPA PITPPLPEIY RIPNPPPKLP EISIPPTLTL SPSPKHSNFV
NFLENNLPHH QTLTPQTLLG FLRSKIRNHP LYAHYDFAVF NWAATLDTFR HDHDSFLWMS
RSLAATHRFD DLYRLLSFVA ANPCPCSSGI FSCPELEPIF RSAIDAYCRA RKMDYALLAF
DTMKRLIDGK PNVGVYNTVV NGYVKSGDMD KALRFYQRMG KERAKPDVCT FNILINGYCR
SSKFDLALDL FREMKEKGCE PNVVSFNTLI RGFLSSGKIE EGVKMAYEMI ELGCRFSEAT
CEILVDGLCR EGRVDDACGL VLDLLNKRVL PSEFDYGSLV EKLCGENKAV RAMEMMEELW
KKGQTPCFIA CTTLVEGLRK SGRTEKASGF MEKMMNAGIL PDSVTFNLLL RDLCSSDHST
DANRLRLLAS SKGYEPDETT YHVLVSGFTK EGRRKEGEVL VNEMLDKDML PDIFTYNRLM
DGLSCTGKFS RKQVRML
