PP189_ARATH
ID PP189_ARATH Reviewed; 625 AA.
AC Q9SJK9;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2000, sequence version 1.
DT 03-AUG-2022, entry version 115.
DE RecName: Full=Pentatricopeptide repeat-containing protein At2g36980, mitochondrial;
DE Flags: Precursor;
GN Name=PCMP-E73; OrderedLocusNames=At2g36980; ORFNames=T1J8.16;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 1-240, AND NUCLEOTIDE SEQUENCE
RP [LARGE SCALE MRNA] OF 540-625.
RC STRAIN=cv. Columbia;
RX PubMed=16244158; DOI=10.1104/pp.105.063479;
RA Xiao Y.-L., Smith S.R., Ishmael N., Redman J.C., Kumar N., Monaghan E.L.,
RA Ayele M., Haas B.J., Wu H.C., Town C.D.;
RT "Analysis of the cDNAs of hypothetical genes on Arabidopsis chromosome 2
RT reveals numerous transcript variants.";
RL Plant Physiol. 139:1323-1337(2005).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-E subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC006922; AAD31583.1; -; Genomic_DNA.
DR EMBL; CP002685; AEC09330.1; -; Genomic_DNA.
DR EMBL; AY461626; -; NOT_ANNOTATED_CDS; mRNA.
DR EMBL; AY461627; -; NOT_ANNOTATED_CDS; mRNA.
DR PIR; A84787; A84787.
DR RefSeq; NP_181235.1; NM_129254.3.
DR AlphaFoldDB; Q9SJK9; -.
DR SMR; Q9SJK9; -.
DR STRING; 3702.AT2G36980.1; -.
DR PaxDb; Q9SJK9; -.
DR PRIDE; Q9SJK9; -.
DR EnsemblPlants; AT2G36980.1; AT2G36980.1; AT2G36980.
DR GeneID; 818272; -.
DR Gramene; AT2G36980.1; AT2G36980.1; AT2G36980.
DR KEGG; ath:AT2G36980; -.
DR Araport; AT2G36980; -.
DR TAIR; locus:2057986; AT2G36980.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_0_1_1; -.
DR InParanoid; Q9SJK9; -.
DR OMA; HMELAHE; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9SJK9; -.
DR PRO; PR:Q9SJK9; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; Q9SJK9; baseline and differential.
DR Genevisible; Q9SJK9; AT.
DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IBA:GO_Central.
DR GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; -; 5.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 4.
DR Pfam; PF13041; PPR_2; 4.
DR TIGRFAMs; TIGR00756; PPR; 7.
DR PROSITE; PS51375; PPR; 14.
PE 2: Evidence at transcript level;
KW Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..7
FT /note="Mitochondrion"
FT /evidence="ECO:0000255"
FT CHAIN 8..625
FT /note="Pentatricopeptide repeat-containing protein
FT At2g36980, mitochondrial"
FT /id="PRO_0000356048"
FT REPEAT 3..33
FT /note="PPR 1"
FT REPEAT 34..68
FT /note="PPR 2"
FT REPEAT 69..103
FT /note="PPR 3"
FT REPEAT 104..134
FT /note="PPR 4"
FT REPEAT 137..167
FT /note="PPR 5"
FT REPEAT 168..202
FT /note="PPR 6"
FT REPEAT 203..238
FT /note="PPR 7"
FT REPEAT 239..269
FT /note="PPR 8"
FT REPEAT 270..300
FT /note="PPR 9"
FT REPEAT 301..335
FT /note="PPR 10"
FT REPEAT 336..370
FT /note="PPR 11"
FT REPEAT 371..401
FT /note="PPR 12"
FT REPEAT 402..436
FT /note="PPR 13"
FT REPEAT 437..471
FT /note="PPR 14"
FT REPEAT 473..503
FT /note="PPR 15"
FT REGION 512..587
FT /note="Type E motif"
FT REGION 588..618
FT /note="Type E(+) motif"
SQ SEQUENCE 625 AA; 69097 MW; 3339FD9DDD201C1E CRC64;
MSVLVRLTSK IASLAKSGRI ASARQVFDGM PELDTVAWNT MLTSYSRLGL HQEAIALFTQ
LRFSDAKPDD YSFTAILSTC ASLGNVKFGR KIQSLVIRSG FCASLPVNNS LIDMYGKCSD
TLSANKVFRD MCCDSRNEVT WCSLLFAYMN AEQFEAALDV FVEMPKRVAF AWNIMISGHA
HCGKLESCLS LFKEMLESEF KPDCYTFSSL MNACSADSSN VVYGRMVHAV MLKNGWSSAV
EAKNSVLSFY TKLGSRDDAM RELESIEVLT QVSWNSIIDA CMKIGETEKA LEVFHLAPEK
NIVTWTTMIT GYGRNGDGEQ ALRFFVEMMK SGVDSDHFAY GAVLHACSGL ALLGHGKMIH
GCLIHCGFQG YAYVGNALVN LYAKCGDIKE ADRAFGDIAN KDLVSWNTML FAFGVHGLAD
QALKLYDNMI ASGIKPDNVT FIGLLTTCSH SGLVEEGCMI FESMVKDYRI PLEVDHVTCM
IDMFGRGGHL AEAKDLATTY SSLVTDSSNN SSWETLLGAC STHWHTELGR EVSKVLKIAE
PSEEMSFVLL SNLYCSTGRW KEGEDVRREM VERGMKKTPG CSWIEVGNQV STFVVGDSSH
PRLEELSETL NCLQHEMRNP ETFGP
