PP190_ARATH
ID PP190_ARATH Reviewed; 757 AA.
AC Q9ZUU3;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-1999, sequence version 1.
DT 25-MAY-2022, entry version 115.
DE RecName: Full=Pentatricopeptide repeat-containing protein At2g37230;
GN OrderedLocusNames=At2g37230; ORFNames=F3G5.2;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC005896; AAC98044.1; -; Genomic_DNA.
DR EMBL; CP002685; AEC09370.1; -; Genomic_DNA.
DR EMBL; BT005729; AAO64144.1; -; mRNA.
DR EMBL; AK228383; BAF00321.1; -; mRNA.
DR PIR; B84790; B84790.
DR RefSeq; NP_181260.1; NM_129279.4.
DR AlphaFoldDB; Q9ZUU3; -.
DR SMR; Q9ZUU3; -.
DR BioGRID; 3644; 1.
DR STRING; 3702.AT2G37230.1; -.
DR PaxDb; Q9ZUU3; -.
DR PRIDE; Q9ZUU3; -.
DR ProteomicsDB; 249081; -.
DR EnsemblPlants; AT2G37230.1; AT2G37230.1; AT2G37230.
DR GeneID; 818300; -.
DR Gramene; AT2G37230.1; AT2G37230.1; AT2G37230.
DR KEGG; ath:AT2G37230; -.
DR Araport; AT2G37230; -.
DR TAIR; locus:2049756; AT2G37230.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_24_1; -.
DR InParanoid; Q9ZUU3; -.
DR OMA; NMDMAHK; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9ZUU3; -.
DR PRO; PR:Q9ZUU3; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; Q9ZUU3; baseline and differential.
DR GO; GO:0009534; C:chloroplast thylakoid; HDA:TAIR.
DR GO; GO:0009535; C:chloroplast thylakoid membrane; HDA:TAIR.
DR GO; GO:0005783; C:endoplasmic reticulum; HDA:TAIR.
DR GO; GO:0003729; F:mRNA binding; IDA:TAIR.
DR GO; GO:0009409; P:response to cold; IMP:TAIR.
DR Gene3D; 1.25.40.10; -; 5.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 3.
DR Pfam; PF13041; PPR_2; 2.
DR Pfam; PF13812; PPR_3; 1.
DR TIGRFAMs; TIGR00756; PPR; 8.
DR PROSITE; PS51375; PPR; 15.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..757
FT /note="Pentatricopeptide repeat-containing protein
FT At2g37230"
FT /id="PRO_0000356049"
FT REPEAT 149..183
FT /note="PPR 1"
FT REPEAT 184..218
FT /note="PPR 2"
FT REPEAT 219..253
FT /note="PPR 3"
FT REPEAT 254..288
FT /note="PPR 4"
FT REPEAT 289..323
FT /note="PPR 5"
FT REPEAT 324..358
FT /note="PPR 6"
FT REPEAT 359..393
FT /note="PPR 7"
FT REPEAT 395..429
FT /note="PPR 8"
FT REPEAT 430..464
FT /note="PPR 9"
FT REPEAT 473..507
FT /note="PPR 10"
FT REPEAT 510..541
FT /note="PPR 11"
FT REPEAT 542..576
FT /note="PPR 12"
FT REPEAT 577..611
FT /note="PPR 13"
FT REPEAT 614..648
FT /note="PPR 14"
FT REPEAT 651..680
FT /note="PPR 15"
FT REPEAT 681..715
FT /note="PPR 16"
FT REGION 39..82
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 39..54
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 55..82
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 757 AA; 85705 MW; 67646F6B9F972AE3 CRC64;
MAFISRSKRY QSKARVYLSL PRSSNSSLFS LPRLFSTIEE TQTPANANPE TQSPDAKSET
KKNLTSTETR PLRERFQRGK RQNHEKLEDT ICRMMDNRAW TTRLQNSIRD LVPEWDHSLV
YNVLHGAKKL EHALQFFRWT ERSGLIRHDR DTHMKMIKML GEVSKLNHAR CILLDMPEKG
VPWDEDMFVV LIESYGKAGI VQESVKIFQK MKDLGVERTI KSYNSLFKVI LRRGRYMMAK
RYFNKMVSEG VEPTRHTYNL MLWGFFLSLR LETALRFFED MKTRGISPDD ATFNTMINGF
CRFKKMDEAE KLFVEMKGNK IGPSVVSYTT MIKGYLAVDR VDDGLRIFEE MRSSGIEPNA
TTYSTLLPGL CDAGKMVEAK NILKNMMAKH IAPKDNSIFL KLLVSQSKAG DMAAATEVLK
AMATLNVPAE AGHYGVLIEN QCKASAYNRA IKLLDTLIEK EIILRHQDTL EMEPSAYNPI
IEYLCNNGQT AKAEVLFRQL MKRGVQDQDA LNNLIRGHAK EGNPDSSYEI LKIMSRRGVP
RESNAYELLI KSYMSKGEPG DAKTALDSMV EDGHVPDSSL FRSVIESLFE DGRVQTASRV
MMIMIDKNVG IEDNMDLIAK ILEALLMRGH VEEALGRIDL LNQNGHTADL DSLLSVLSEK
GKTIAALKLL DFGLERDLSL EFSSYDKVLD ALLGAGKTLN AYSVLCKIME KGSSTDWKSS
DELIKSLNQE GNTKQADVLS RMIKKGQGIK KQNNVSL
